The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Retinoid X Receptor
".
FunFam 19: Nuclear receptor subfamily 2 group E member 1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 11 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
21 |
Q64104 (/IPI)
Q64104 (/IPI)
Q9Y466 (/IPI)
Q9Y466 (/IPI)
Q9Y466 (/IPI)
Q9Y466 (/IPI)
Q9Y466 (/IPI)
Q9Y466 (/IPI)
Q9Y466 (/IPI)
Q9Y466 (/IPI)
(11 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
19 |
Q9Y466 (/ISA)
Q9Y466 (/ISA)
Q9Y466 (/ISA)
Q9Y466 (/ISA)
Q9Y466 (/ISA)
Q9Y466 (/ISA)
Q9Y466 (/ISA)
Q9Y466 (/ISA)
Q9Y466 (/ISA)
Q9Y466 (/ISA)
(9 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
19 |
Q9Y466 (/ISM)
Q9Y466 (/ISM)
Q9Y466 (/ISM)
Q9Y466 (/ISM)
Q9Y466 (/ISM)
Q9Y466 (/ISM)
Q9Y466 (/ISM)
Q9Y466 (/ISM)
Q9Y466 (/ISM)
Q9Y466 (/ISM)
(9 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
19 |
Q9Y466 (/NAS)
Q9Y466 (/NAS)
Q9Y466 (/NAS)
Q9Y466 (/NAS)
Q9Y466 (/NAS)
Q9Y466 (/NAS)
Q9Y466 (/NAS)
Q9Y466 (/NAS)
Q9Y466 (/NAS)
Q9Y466 (/NAS)
(9 more) |
Steroid hormone receptor activity GO:0003707
Combining with a steroid hormone and transmitting the signal within the cell to initiate a change in cell activity or function.
|
19 |
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
(9 more) |
DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001227
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to repress or decrease transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
2 | Q64104 (/IDA) Q64104 (/IDA) |
DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0001227
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to repress or decrease transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
2 | Q64104 (/IDA) Q64104 (/IDA) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
2 | Q64104 (/IDA) Q64104 (/IDA) |
Enzyme binding GO:0019899
Interacting selectively and non-covalently with any enzyme.
|
2 | Q64104 (/IPI) Q64104 (/IPI) |
Histone deacetylase binding GO:0042826
Interacting selectively and non-covalently with the enzyme histone deacetylase.
|
2 | Q64104 (/IPI) Q64104 (/IPI) |
There are 37 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
19 |
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
(9 more) |
Nervous system development GO:0007399
The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
|
19 |
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
(9 more) |
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
2 | Q64104 (/IDA) Q64104 (/IDA) |
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Behavioral fear response GO:0001662
An acute behavioral change resulting from a perceived external threat.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Aggressive behavior GO:0002118
A behavioral interaction between organisms in which one organism has the intention of inflicting physical damage on another individual.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Visual perception GO:0007601
The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Positive regulation of cell population proliferation GO:0008284
Any process that activates or increases the rate or extent of cell proliferation.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Glial cell migration GO:0008347
The orderly movement of a glial cell, non-neuronal cells that provide support and nutrition, maintain homeostasis, form myelin, and participate in signal transmission in the nervous system.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Dentate gyrus development GO:0021542
The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Amygdala development GO:0021764
The progression of the amygdala over time from its initial formation until its mature state. The amygdala is an almond-shaped set of neurons in the medial temporal lobe of the brain that play a key role in processing emotions such as fear and pleasure.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Olfactory bulb development GO:0021772
The progression of the olfactory bulb over time from its initial formation until its mature state. The olfactory bulb coordinates neuronal signaling involved in the perception of smell. It receives input from the sensory neurons and outputs to the olfactory cortex.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Layer formation in cerebral cortex GO:0021819
The detachment of cells from radial glial fibers at the appropriate time when they cease to migrate and form distinct layer in the cerebral cortex.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Forebrain generation of neurons GO:0021872
The process in which nerve cells are generated in the forebrain. This includes the production of neuroblasts from and their differentiation into neurons.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Cerebral cortex neuron differentiation GO:0021895
The process in which a relatively unspecialized cell acquires specialized features of a neuron residing in the cerebral cortex.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Anterior commissure morphogenesis GO:0021960
Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body in one half of the cerebral cortex towards target cells in the contralateral half. This axonal process is a member of those that make up the anterior commissure, a small midline fiber tract that lies at the anterior end of the corpus callosum.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Cerebral cortex development GO:0021987
The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Extracellular matrix organization GO:0030198
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Somatic stem cell population maintenance GO:0035019
Any process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Social behavior GO:0035176
Behavior directed towards society, or taking place between members of the same species. Occurs predominantly, or only, in individuals that are part of a group.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Camera-type eye development GO:0043010
The process whose specific outcome is the progression of the camera-type eye over time, from its formation to the mature structure. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Negative regulation of apoptotic process GO:0043066
Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Cell fate commitment GO:0045165
The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.
|
2 | Q64104 (/IGI) Q64104 (/IGI) |
Negative regulation of neuron differentiation GO:0045665
Any process that stops, prevents, or reduces the frequency, rate or extent of neuron differentiation.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Positive regulation of angiogenesis GO:0045766
Any process that activates or increases angiogenesis.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Positive regulation of cell cycle GO:0045787
Any process that activates or increases the rate or extent of progression through the cell cycle.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Negative regulation of astrocyte differentiation GO:0048712
Any process that stops, prevents, or reduces the frequency, rate or extent of astrocyte differentiation.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Regulation of dendrite morphogenesis GO:0048814
Any process that modulates the frequency, rate or extent of dendrite morphogenesis.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Regulation of cellular component organization GO:0051128
Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Retina development in camera-type eye GO:0060041
The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Regulation of timing of neuron differentiation GO:0060164
The process controlling the activation and/or rate at which a relatively unspecialized cell acquires features of a neuron.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Long-term synaptic potentiation GO:0060291
A process that modulates synaptic plasticity such that synapses are changed resulting in the increase in the rate, or frequency of synaptic transmission at the synapse.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Regulation of cell migration involved in sprouting angiogenesis GO:0090049
Any process that modulates the frequency, rate or extent of cell migration involved in sprouting angiogenesis. Cell migration involved in sprouting angiogenesis is the orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels contributing to the process of sprouting angiogenesis.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Negative regulation of neural precursor cell proliferation GO:2000178
Any process that stops, prevents, or reduces the frequency, rate or extent of neural precursor cell proliferation.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Positive regulation of neural precursor cell proliferation GO:2000179
Any process that activates or increases the frequency, rate or extent of neural precursor cell proliferation.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
Positive regulation of stem cell proliferation GO:2000648
Any process that activates or increases the frequency, rate or extent of stem cell proliferation.
|
2 | Q64104 (/IMP) Q64104 (/IMP) |
There are 2 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
21 |
Q64104 (/TAS)
Q64104 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
Q9Y466 (/TAS)
(11 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | Q64104 (/IDA) Q64104 (/IDA) |