The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
L-arginine/glycine Amidinotransferase; Chain A
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 3: Protein-arginine deiminase type-2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 22 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein-arginine deiminase activity GO:0004668
Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3.
14 E1C0W6 (/IDA) F1NP39 (/IDA) O57400 (/IDA) O88806 (/IDA) O88807 (/IDA) P20717 (/IDA) P70708 (/IDA) Q9ULC6 (/IDA) Q9UM07 (/IDA) Q9Y2J8 (/IDA)
(4 more)
Calcium ion binding GO:0005509
Interacting selectively and non-covalently with calcium ions (Ca2+).
7 O88806 (/ISS) O88807 (/ISS) P20717 (/ISS) Q08642 (/ISS) Q9Z183 (/ISS) Q9Z185 (/ISS) Q9Z185 (/ISS)
Protein-arginine deiminase activity GO:0004668
Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3.
6 Q9ULW8 (/TAS) Q9UM07 (/TAS) Q9Z183 (/TAS) Q9Z184 (/TAS) Q9Z185 (/TAS) Q9Z185 (/TAS)
Calcium ion binding GO:0005509
Interacting selectively and non-covalently with calcium ions (Ca2+).
6 Q9ULC6 (/IDA) Q9UM07 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
Protein-arginine deiminase activity GO:0004668
Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3.
5 Q08642 (/ISO) Q9Z183 (/ISO) Q9Z184 (/ISO) Q9Z185 (/ISO) Q9Z185 (/ISO)
Protein-arginine deiminase activity GO:0004668
Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3.
5 O02849 (/ISS) Q08642 (/ISS) Q9Z184 (/ISS) Q9Z185 (/ISS) Q9Z185 (/ISS)
Calcium ion binding GO:0005509
Interacting selectively and non-covalently with calcium ions (Ca2+).
4 Q08642 (/ISO) Q9Z183 (/ISO) Q9Z185 (/ISO) Q9Z185 (/ISO)
Estrogen receptor binding GO:0030331
Interacting selectively and non-covalently with an estrogen receptor.
4 Q9Y2J8 (/IPI) Q9Y2J8 (/IPI) Q9Y2J8 (/IPI) Q9Y2J8 (/IPI)
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
4 Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
Protein-arginine deiminase activity GO:0004668
Catalysis of the reaction: protein L-arginine + H2O = protein L-citrulline + NH3.
3 Q8K3V4 (/IMP) Q9ULW8 (/IMP) Q9UM07 (/IMP)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
2 Q8K3V4 (/IPI) Q9UM07 (/IPI)
Arginine deiminase activity GO:0016990
Catalysis of the reaction: L-arginine + H2O = L-citrulline + NH3.
2 G1T837 (/IDA) Q9UM07 (/IDA)
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
2 Q08642 (/ISO) Q9Z183 (/ISO)
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
2 P20717 (/ISS) Q08642 (/ISS)
Calcium ion binding GO:0005509
Interacting selectively and non-covalently with calcium ions (Ca2+).
1 Q9UM07 (/IMP)
Arginine deiminase activity GO:0016990
Catalysis of the reaction: L-arginine + H2O = L-citrulline + NH3.
1 Q9Z183 (/ISO)
Estrogen receptor binding GO:0030331
Interacting selectively and non-covalently with an estrogen receptor.
1 Q08642 (/ISO)
Arginine binding GO:0034618
Interacting selectively and non-covalently with 2-amino-5-(carbamimidamido)pentanoic acid.
1 Q9UM07 (/IMP)
Arginine binding GO:0034618
Interacting selectively and non-covalently with 2-amino-5-(carbamimidamido)pentanoic acid.
1 Q9Z183 (/ISO)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
1 Q9ULW8 (/IPI)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
1 Q9Z184 (/ISO)
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
1 Q9UM07 (/IMP)

There are 43 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein citrullination GO:0018101
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline.
11 G1T837 (/IDA) O88806 (/IDA) O88807 (/IDA) P20717 (/IDA) P70708 (/IDA) Q9ULC6 (/IDA) Q9UM07 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
(1 more)
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
7 Q9ULC6 (/TAS) Q9ULW8 (/TAS) Q9UM07 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS)
Protein citrullination GO:0018101
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline.
5 Q08642 (/ISO) Q9Z183 (/ISO) Q9Z184 (/ISO) Q9Z185 (/ISO) Q9Z185 (/ISO)
Protein citrullination GO:0018101
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline.
5 O02849 (/ISS) Q08642 (/ISS) Q9Z184 (/ISS) Q9Z185 (/ISS) Q9Z185 (/ISS)
Histone H3-R26 citrullination GO:0036413
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline at position 26 in histone H3.
5 Q9UM07 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
Regulation of chromatin disassembly GO:0010848
Any process that modulates the frequency, rate or extent of chromatin disassembly. Chromatin disassembly is the controlled breakdown of chromatin from a higher order structure into its simpler subcomponents, DNA, histones, and other proteins.
4 Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
Substantia nigra development GO:0021762
The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis).
4 Q9Y2J8 (/HEP) Q9Y2J8 (/HEP) Q9Y2J8 (/HEP) Q9Y2J8 (/HEP)
Intracellular estrogen receptor signaling pathway GO:0030520
Any series of molecular signals generated as a consequence of an intracellular estrogen receptor binding to one of its physiological ligands. The pathway begins with receptor-ligand binding, and ends with regulation of a downstream cellular process (e.g. transcription).
4 Q9Y2J8 (/IMP) Q9Y2J8 (/IMP) Q9Y2J8 (/IMP) Q9Y2J8 (/IMP)
Neutrophil degranulation GO:0043312
The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil.
4 Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS)
Chromatin-mediated maintenance of transcription GO:0048096
Maintenance of transcription by remodelling of chromatin into an 'open configuration'. Once established, this regulation is mitotically stable and is maintained over many cell divisions. It is also heritable.
4 Q9Y2J8 (/IMP) Q9Y2J8 (/IMP) Q9Y2J8 (/IMP) Q9Y2J8 (/IMP)
Negative regulation of chemokine-mediated signaling pathway GO:0070100
Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor.
4 Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
Negative regulation of lymphocyte chemotaxis GO:1901624
Any process that stops, prevents or reduces the frequency, rate or extent of lymphocyte chemotaxis.
4 Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
Protein citrullination GO:0018101
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline.
3 Q8K3V4 (/IMP) Q9ULW8 (/IMP) Q9UM07 (/IMP)
Vasculature development GO:0001944
The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.
2 F1QTZ4 (/IMP) Q6PFK7 (/IMP)
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
2 O88807 (/ISS) Q9UM07 (/ISS)
Nucleosome assembly GO:0006334
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
2 O88807 (/ISS) Q9UM07 (/ISS)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
2 O88807 (/ISS) Q9UM07 (/ISS)
Stem cell population maintenance GO:0019827
The process by which an organism or tissue maintains a population of stem cells of a single type. This can be achieved by a number of mechanisms: stem cell asymmetric division maintains stem cell numbers; stem cell symmetric division increases them; maintenance of a stem cell niche maintains the conditions for commitment to the stem cell fate for some types of stem cell; stem cells may arise de novo from other cell types.
2 O88807 (/ISS) Q9UM07 (/ISS)
Histone H3-R26 citrullination GO:0036413
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline at position 26 in histone H3.
2 Q08642 (/ISO) Q9Z183 (/ISO)
Histone H3-R26 citrullination GO:0036413
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline at position 26 in histone H3.
2 O88807 (/ISS) Q9Z183 (/ISS)
Histone citrullination GO:0036414
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline on a histone protein.
2 Q9UM07 (/IDA) Q9Z183 (/IDA)
Negative regulation of cell-matrix adhesion GO:0001953
Any process that stops, prevents, or reduces the rate or extent of cell adhesion to the extracellular matrix.
1 G1T837 (/IDA)
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
1 Q9Z183 (/IMP)
Nucleosome assembly GO:0006334
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
1 Q9Z183 (/IMP)
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
1 Q9Z183 (/IMP)
Cellular protein modification process GO:0006464
The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
1 Q9UM07 (/TAS)
Cytoskeleton organization GO:0007010
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.
1 Q8K3V4 (/IMP)
Cytoplasm organization GO:0007028
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q8K3V4 (/IMP)
Regulation of chromatin disassembly GO:0010848
Any process that modulates the frequency, rate or extent of chromatin disassembly. Chromatin disassembly is the controlled breakdown of chromatin from a higher order structure into its simpler subcomponents, DNA, histones, and other proteins.
1 Q08642 (/ISO)
Arginine deiminase pathway GO:0019546
The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase.
1 Q9UM07 (/IMP)
Arginine deiminase pathway GO:0019546
The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase.
1 Q9Z183 (/ISO)
Arginine deiminase pathway GO:0019546
The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase.
1 P70708 (/NAS)
Stem cell population maintenance GO:0019827
The process by which an organism or tissue maintains a population of stem cells of a single type. This can be achieved by a number of mechanisms: stem cell asymmetric division maintains stem cell numbers; stem cell symmetric division increases them; maintenance of a stem cell niche maintains the conditions for commitment to the stem cell fate for some types of stem cell; stem cells may arise de novo from other cell types.
1 Q9Z183 (/IMP)
Intracellular estrogen receptor signaling pathway GO:0030520
Any series of molecular signals generated as a consequence of an intracellular estrogen receptor binding to one of its physiological ligands. The pathway begins with receptor-ligand binding, and ends with regulation of a downstream cellular process (e.g. transcription).
1 Q08642 (/ISO)
Cellular protein localization GO:0034613
Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell.
1 Q8K3V4 (/IMP)
Histone citrullination GO:0036414
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline on a histone protein.
1 Q9Z183 (/ISO)
Histone citrullination GO:0036414
The hydrolysis of peptidyl-arginine to form peptidyl-citrulline on a histone protein.
1 O88807 (/ISS)
Regulation of translation by machinery localization GO:0043143
Any process in which proteins and protein complexes involved in translation are transported to, or maintained in, a specific location.
1 Q8K3V4 (/IMP)
Chromatin-mediated maintenance of transcription GO:0048096
Maintenance of transcription by remodelling of chromatin into an 'open configuration'. Once established, this regulation is mitotically stable and is maintained over many cell divisions. It is also heritable.
1 Q08642 (/ISO)
Negative regulation of chemokine-mediated signaling pathway GO:0070100
Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor.
1 Q08642 (/ISO)
Negative regulation of lymphocyte chemotaxis GO:1901624
Any process that stops, prevents or reduces the frequency, rate or extent of lymphocyte chemotaxis.
1 Q08642 (/ISO)
Cellular response to leukemia inhibitory factor GO:1990830
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leukemia inhibitory factor stimulus.
1 Q08642 (/IEP)
Negative regulation of integrin-mediated signaling pathway GO:2001045
Any process that stops, prevents or reduces the frequency, rate or extent of integrin-mediated signaling pathway.
1 G1T837 (/IDA)

There are 21 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
8 Q6TGC4 (/IDA) Q8K3V4 (/IDA) Q9ULC6 (/IDA) Q9ULW8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
7 Q9ULC6 (/TAS) Q9ULW8 (/TAS) Q9UM07 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
6 O02849 (/ISS) O88806 (/ISS) P70708 (/ISS) Q9Z184 (/ISS) Q9Z185 (/ISS) Q9Z185 (/ISS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
5 Q08642 (/ISO) Q8K3V4 (/ISO) Q9Z184 (/ISO) Q9Z185 (/ISO) Q9Z185 (/ISO)
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
4 Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS)
Transcriptionally active chromatin GO:0035327
The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed.
4 Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA) Q9Y2J8 (/IDA)
Azurophil granule lumen GO:0035578
The volume enclosed by the membrane of an azurophil granule, a primary lysosomal granule found in neutrophil granulocytes that contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.
4 Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS) Q9Y2J8 (/TAS)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
4 Q9Y2J8 (/HDA) Q9Y2J8 (/HDA) Q9Y2J8 (/HDA) Q9Y2J8 (/HDA)
Cell GO:0005623
The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
3 E1C0W6 (/IDA) F1NP39 (/IDA) O57400 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
2 O88807 (/ISS) Q9Z183 (/ISS)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
2 Q9Z185 (/ISO) Q9Z185 (/ISO)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
2 Q9Z185 (/ISO) Q9Z185 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9UM07 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9Z183 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q9ULC6 (/IDA)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q9UM07 (/TAS)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q9ULC6 (/IDA)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
1 Q9UM07 (/IMP)
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
1 Q9Z183 (/ISO)
Transcriptionally active chromatin GO:0035327
The ordered and organized complex of DNA and protein that forms regions of the chromosome that are being actively transcribed.
1 Q08642 (/ISO)
Intermediate filament cytoskeleton GO:0045111
Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell.
1 Q8K3V4 (/IDA)
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