CATH Classification
Level | CATH Code | Description |
---|---|---|
3 | Alpha Beta | |
3.30 | 2-Layer Sandwich | |
3.30.40 | Herpes Virus-1 | |
3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) |
Domain Context
CATH Clusters
Superfamily | Zinc/RING finger domain, C3HC4 (zinc finger) |
Functional Family | E3 ubiquitin-protein ligase RBX1 |
Enzyme Information
2.3.2.32 |
Cullin-RING-type E3 NEDD8 transferase.
based on mapping to UniProt P62877
S-[NEDD8-protein]-yl-[E2 NEDD8-conjugating enzyme]-L-cysteine + [cullin]- L-lysine = [E2 NEDD8-conjugating enzyme]-L-cysteine + N(6)-[NEDD8- protein]-yl-[cullin]-L-lysine.
-!- Some RING-type E3 ubiquitin transferase (EC 2.3.2.27) are not able to bind a substrate protein directly. -!- Instead, they form a complex with a cullin scaffold protein and a substrate recognition module, which is named CRL for Cullin-RING- Ligase. -!- The cullin protein needs to be activated by the ubiquitin-like protein NEDD8 in a process known as neddylation. -!- The transfer of NEDD8 from a NEDD8-specific E2 enzyme onto the cullin protein is a secondary function of the RING-type E3 ubiquitin transferase in the CRL complex. -!- The process requires auxiliary factors that belong to the DCN1 (defective in cullin neddylation 1) family.
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2.3.2.27 |
RING-type E3 ubiquitin transferase.
based on mapping to UniProt P62877
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)- ubiquitinyl-[acceptor protein]-L-lysine.
-!- RING E3 ubiquitin transferases serve as mediators bringing the ubiquitin-charged E2 ubiquitin-conjugating enzyme (EC 2.3.2.23) and an acceptor protein together to enable the direct transfer of ubiquitin through the formation of an isopeptide bond between the C-terminal glycine residue of ubiquitin and the epsilon-amino group of an L-lysine residue of the acceptor protein. -!- Unlike EC 2.3.2.26 the RING-E3 domain does not form a catalytic thioester intermediate with ubiquitin. -!- Many members of the RING-type E3 ubiquitin transferase family are not able to bind a substrate directly, and form a complex with a cullin scaffold protein and a substrate recognition module (the complexes are named CRL for Cullin-RING-Ligase). -!- In these complexes, the RING-type E3 ubiquitin transferase provides an additional function, mediating the transfer of a NEDD8 protein from a dedicated E2 carrier to the cullin protein (see EC 2.3.2.32). -!- Cf. EC 2.3.2.31.
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UniProtKB Entries (2)
Q16531 |
DDB1_HUMAN
Homo sapiens
DNA damage-binding protein 1
|
P11207 |
V_PIV5
Simian virus 5 (strain W3)
Non-structural protein V
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PDB Structure
PDB | 2HYE |
External Links | |
Method | X-RAY DIFFRACTION |
Organism | Spodoptera |
Primary Citation |
Molecular architecture and assembly of the DDB1-CUL4A ubiquitin ligase machinery.
Nature
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