CATH Classification
Level | CATH Code | Description |
---|---|---|
3 | Alpha Beta | |
3.20 | Alpha-Beta Barrel | |
3.20.70 | Anaerobic Ribonucleotide-triphosphate Reductase Large Chain | |
3.20.70.20 |
Domain Context
CATH Clusters
Superfamily | 3.20.70.20 |
Functional Family |
Enzyme Information
1.1.98.6 |
Ribonucleoside-triphosphate reductase (formate).
based on mapping to UniProt P07071
Ribonucleoside 5'-triphosphate + formate = 2'-deoxyribonucleoside 5'-triphosphate + CO(2) + H(2)O.
-!- The enzyme, which is expressed in the bacterium Escherichia coli during anaerobic growth, contains an iron sulfur center. -!- The active form of the enzyme contains an oxygen-sensitive glycyl (1-amino-2-oxoethan-1-yl) radical that is generated by the activating enzyme NrdG via chemistry involving S-adenosylmethionine (SAM) and a [4Fe-4S] cluster. -!- The glycyl radical is involved in generation of a transient thiyl (sulfanyl) radical on a cysteine residue, which attacks the substrate, forming a ribonucleotide 3'-radical, followed by water loss to form a ketyl (alpha-oxoalkyl) radical. -!- The ketyl radical gains an electron from a cysteine residue and a proton from formic acid, forming 3'-keto-deoxyribonucleotide and generating a thiosulfuranyl (1-lambda(4)-disulfan-1-yl) radical bridge between methionine and cysteine residues. -!- Oxidation of formate by the thiosulfuranyl radical results in the release of CO(2) and regeneration of the thiyl radical. -!- Cf. EC 1.17.4.1 and EC 1.17.4.2.
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UniProtKB Entries (1)
P07071 |
NRDD_BPT4
Escherichia virus T4
Anaerobic ribonucleoside-triphosphate reductase
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PDB Structure
PDB | 1H79 |
External Links | |
Method | X-RAY DIFFRACTION |
Organism | |
Primary Citation |
Structural Basis for Allosteric Substrate Specificty Regulation in Anaerobic Ribonucleotide Reductase
Structure
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