PDB 6j6q
PDB Information
| PDB | 6J6Q |
| Method | ELECTRON MICROSCOPY |
| Host Organism | |
| Gene Source | |
| Primary Citation | Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching.
Cell
|
| Header | Splicing |
| Released | 2019-01-15 |
| Resolution | 3.700 |
| CATH Insert Date | 28 Apr, 2019 |
PDB Images (56)
6j6q
PDB 6j6q
6j6qa
PDB Chain 6j6qa
6j6qA
PDB Chain 6j6qA
6j6qb
PDB Chain 6j6qb
6j6qB
PDB Chain 6j6qB
6j6qc
PDB Chain 6j6qc
6j6qC
PDB Chain 6j6qC
6j6qd
PDB Chain 6j6qd
6j6qD
PDB Chain 6j6qD
6j6qe
PDB Chain 6j6qe
6j6qE
PDB Chain 6j6qE
6j6qF
PDB Chain 6j6qF
6j6qg
PDB Chain 6j6qg
6j6qh
PDB Chain 6j6qh
6j6qH
PDB Chain 6j6qH
6j6qi
PDB Chain 6j6qi
6j6qI
PDB Chain 6j6qI
6j6qj
PDB Chain 6j6qj
6j6qJ
PDB Chain 6j6qJ
6j6qk
PDB Chain 6j6qk
6j6ql
PDB Chain 6j6ql
6j6qL
PDB Chain 6j6qL
6j6qm
PDB Chain 6j6qm
6j6qn
PDB Chain 6j6qn
6j6qo
PDB Chain 6j6qo
6j6qO
PDB Chain 6j6qO
6j6qp
PDB Chain 6j6qp
6j6qP
PDB Chain 6j6qP
6j6qq
PDB Chain 6j6qq
6j6qQ
PDB Chain 6j6qQ
6j6qr
PDB Chain 6j6qr
6j6qR
PDB Chain 6j6qR
6j6qs
PDB Chain 6j6qs
6j6qS
PDB Chain 6j6qS
6j6qt
PDB Chain 6j6qt
6j6qT
PDB Chain 6j6qT
6j6qu
PDB Chain 6j6qu
6j6qv
PDB Chain 6j6qv
6j6qw
PDB Chain 6j6qw
6j6qx
PDB Chain 6j6qx
6j6qy
PDB Chain 6j6qy
6j6qz
PDB Chain 6j6qz
6j6qZ
PDB Chain 6j6qZ
6j6qa00
CATH Domain 6j6qa00
6j6qb00
CATH Domain 6j6qb00
6j6qe00
CATH Domain 6j6qe00
6j6qg00
CATH Domain 6j6qg00
6j6qh00
CATH Domain 6j6qh00
6j6qi00
CATH Domain 6j6qi00
6j6qI00
CATH Domain 6j6qI00
6j6qj00
CATH Domain 6j6qj00
6j6ql00
CATH Domain 6j6ql00
6j6qu00
CATH Domain 6j6qu00
6j6qw00
CATH Domain 6j6qw00
6j6qx00
CATH Domain 6j6qx00
6j6qy00
CATH Domain 6j6qy00
PDB Prints
PDB Chains (42)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| a | 28 Apr, 2019 | Chopped |
| A | 28 Apr, 2019 | Holding pen |
| b | 28 Apr, 2019 | Chopped |
| B | 28 Apr, 2019 | Rejected |
| c | 28 Apr, 2019 | Holding pen |
| C | 28 Apr, 2019 | Holding pen |
| d | 28 Apr, 2019 | Holding pen |
| D | 28 Apr, 2019 | Rejected |
| e | 28 Apr, 2019 | Chopped |
| E | 28 Apr, 2019 | Rejected |
| F | 28 Apr, 2019 | Holding pen |
| g | 28 Apr, 2019 | Chopped |
| h | 28 Apr, 2019 | Chopped |
| H | 28 Apr, 2019 | Holding pen |
| i | 28 Apr, 2019 | Chopped |
| I | 28 Apr, 2019 | Chopped |
| j | 28 Apr, 2019 | Chopped |
| J | 28 Apr, 2019 | Rejected |
| k | 28 Apr, 2019 | Holding pen |
| l | 28 Apr, 2019 | Chopped |
| L | 28 Apr, 2019 | Rejected |
| m | 28 Apr, 2019 | Holding pen |
| n | 28 Apr, 2019 | Holding pen |
| o | 28 Apr, 2019 | Holding pen |
| O | 28 Apr, 2019 | Holding pen |
| p | 28 Apr, 2019 | Holding pen |
| P | 28 Apr, 2019 | Holding pen |
| q | 28 Apr, 2019 | Holding pen |
| Q | 28 Apr, 2019 | Holding pen |
| r | 28 Apr, 2019 | Holding pen |
| R | 28 Apr, 2019 | Holding pen |
| s | 28 Apr, 2019 | Holding pen |
| S | 28 Apr, 2019 | Holding pen |
| t | 28 Apr, 2019 | Holding pen |
| T | 28 Apr, 2019 | Holding pen |
| u | 28 Apr, 2019 | Chopped |
| v | 28 Apr, 2019 | Holding pen |
| w | 28 Apr, 2019 | Chopped |
| x | 28 Apr, 2019 | Chopped |
| y | 28 Apr, 2019 | Chopped |
| z | 28 Apr, 2019 | Holding pen |
| Z | 28 Apr, 2019 | Holding pen |
CATH Domains (13)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 6j6qa00 | 29 Apr, 2019 | 3.30.70.330 | Assigned |
| 6j6qb00 | 29 Apr, 2019 | Holding pen | |
| 6j6qe00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6qg00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6qh00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6qi00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6qI00 | 29 Apr, 2019 | Holding pen | |
| 6j6qj00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6ql00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6qu00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6qw00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6qx00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
| 6j6qy00 | 29 Apr, 2019 | 2.30.30.100 | Assigned |
UniProtKB Entries (31)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| P54999 | RUXF_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein F |
| P32523 | PRP19_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 19 |
| Q06217 | SMD2_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D2 |
| P40204 | RUXG_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein G |
| P33334 | PRP8_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor 8 |
| P32523 | PRP19_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 19 |
| Q12046 | CWC2_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CWC2 |
| Q06217 | SMD2_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D2 |
| Q03654 | CEF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CEF1 |
| Q12330 | RUXE_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein E |
| P54999 | RUXF_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein F |
| Q02260 | SMD1_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D1 |
| Q12417 | PRP46_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor PRP46 |
| Q08963 | RU2A_YEAST | Saccharomyces cerevisiae S288C | U2 small nuclear ribonucleoprotein A' |
| Q04048 | SYF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor SYF1 |
| P40018 | RSMB_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein-associated protein B |
| P43321 | SMD3_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D3 |
| Q02260 | SMD1_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D1 |
| P40968 | PRP17_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 17 |
| P40204 | RUXG_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein G |
| Q03375 | CWC21_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CWC21 |
| P53333 | CWC22_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CWC22 |
| P40567 | MSL1_YEAST | Saccharomyces cerevisiae S288C | U2 small nuclear ribonucleoprotein B'' |
| Q12309 | CLF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CLF1 |
| P40018 | RSMB_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein-associated protein B |
| P32523 | PRP19_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 19 |
| P32523 | PRP19_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 19 |
| P21374 | ISY1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor ISY1 |
| P36048 | SN114_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor SNU114 |
| Q12330 | RUXE_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein E |
| P43321 | SMD3_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D3 |