PDB 6ir9

PDB Information

PDB6IR9
MethodELECTRON MICROSCOPY
Host OrganismEscherichia coli
Gene SourceKomagataella phaffii (strain GS115 / ATCC 20864)
Primary Citation
Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Ehara, H., Kujirai, T., Fujino, Y., Shirouzu, M., Kurumizaka, H., Sekine, S.I.
Science
HeaderTranscription/Rna/Dna
Released2018-11-12
Resolution3.800
CATH Insert Date24 Feb, 2019

PDB Images (50)

PDB Prints

PDB Chains (26)

Chain ID Date inserted into CATH CATH Status
a 24 Feb, 2019 Chopped
A 24 Feb, 2019 Holding pen
b 24 Feb, 2019 Chopped
B 24 Feb, 2019 Holding pen
c 24 Feb, 2019 Chopped
C 24 Feb, 2019 Chopped
d 24 Feb, 2019 Chopped
D 24 Feb, 2019 Chopped
e 24 Feb, 2019 Chopped
E 24 Feb, 2019 Chopped
f 24 Feb, 2019 Chopped
F 24 Feb, 2019 Chopped
g 24 Feb, 2019 Chopped
G 24 Feb, 2019 Chopped
h 24 Feb, 2019 Chopped
H 24 Feb, 2019 Chopped
I 24 Feb, 2019 Holding pen
J 24 Feb, 2019 Chopped
K 24 Feb, 2019 Chopped
L 24 Feb, 2019 Chopped
M 24 Feb, 2019 Chopped
N 24 Feb, 2019 Rejected
P 24 Feb, 2019 Rejected
T 24 Feb, 2019 Rejected
V 24 Feb, 2019 Chopped
W 24 Feb, 2019 Write scan list

CATH Domains (23)

Domain ID Date inserted into CATH Superfamily CATH Status
6ir9a00 25 Feb, 2019 1.10.20.10 Assigned
6ir9b00 25 Feb, 2019 1.10.20.10 Assigned
6ir9c00 25 Feb, 2019 1.10.20.10 Assigned
6ir9C01 25 Feb, 2019 3.30.1360.10 Assigned
6ir9C02 25 Feb, 2019 2.170.120.12 Assigned
6ir9d00 25 Feb, 2019 1.10.20.10 Assigned
6ir9D01 25 Feb, 2019 Holding pen
6ir9D02 25 Feb, 2019 1.20.1250.40 Assigned
6ir9e00 25 Feb, 2019 1.10.20.10 Assigned
6ir9E01 25 Feb, 2019 3.40.1340.10 Assigned
6ir9E02 25 Feb, 2019 3.90.940.20 Assigned
6ir9f00 25 Feb, 2019 1.10.20.10 Assigned
6ir9F00 25 Feb, 2019 3.90.940.10 Assigned
6ir9g00 25 Feb, 2019 1.10.20.10 Assigned
6ir9G01 25 Feb, 2019 3.30.1490.120 Assigned
6ir9G02 25 Feb, 2019 2.40.50.140 Assigned
6ir9h00 25 Feb, 2019 1.10.20.10 Assigned
6ir9H00 25 Feb, 2019 2.40.50.140 Assigned
6ir9J00 25 Feb, 2019 1.10.10.60 Assigned
6ir9K00 25 Feb, 2019 3.30.1360.10 Assigned
6ir9L00 25 Feb, 2019 2.20.28.30 Assigned
6ir9M00 25 Feb, 2019 2.20.25.190 Assigned
6ir9V00 25 Feb, 2019 3.30.40.210 Assigned

UniProtKB Entries (23)

Accession Gene ID Taxon Description
P04908 H2A1B_HUMAN Homo sapiens Histone H2A type 1-B/E
C4R3P8 C4R3P8_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III
C4R273 C4R273_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerases I, II, and III subunit RPABC3
F2QMI1 F2QMI1_KOMPC Komagataella phaffii CBS 7435 RNA polymerase subunit ABC10-alpha
C4R4Y0 C4R4Y0_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerase subunit
P06899 H2B1J_HUMAN Homo sapiens Histone H2B type 1-J
C4R9A1 C4R9A1_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit
C4R009 C4R009_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III
C4R1V1 C4R1V1_KOMPG Komagataella phaffii GS115 RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III
P04908 H2A1B_HUMAN Homo sapiens Histone H2A type 1-B/E
F2QPE6 F2QPE6_KOMPC Komagataella phaffii CBS 7435 DNA-directed RNA polymerase subunit
C4R3Z5 C4R3Z5_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit B12.5
C4QZQ7 C4QZQ7_KOMPG Komagataella phaffii GS115 DNA-directed RNA polymerase subunit beta
C4R2U9 C4R2U9_KOMPG Komagataella phaffii GS115 RNA polymerase II subunit B32
P62805 H4_HUMAN Homo sapiens Histone H4
C4R370 C4R370_KOMPG Komagataella phaffii GS115 Protein that forms a complex with Spt4p
P84243 H33_HUMAN Homo sapiens Histone H3.3
C4R0E6 C4R0E6_KOMPG Komagataella phaffii GS115 Transcription elongation factor SPT4
P62805 H4_HUMAN Homo sapiens Histone H4
P84243 H33_HUMAN Homo sapiens Histone H3.3
C4QZ45 C4QZ45_KOMPG Komagataella phaffii GS115 Transcription elongation factor 1 homolog
C4R7L2 C4R7L2_KOMPG Komagataella phaffii GS115 RNA polymerase II third largest subunit B44, part of central core
P06899 H2B1J_HUMAN Homo sapiens Histone H2B type 1-J