PDB 6ddd

PDB Links
Overview

PDB Information

PDB	6DDD
Method	ELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation	cryoEM-Guided Development of Antibiotics for Drug-Resistant Bacteria. Belousoff, M.J., Venugopal, H., Wright, A., Seoner, S., Stuart, I., Stubenrauch, C., Bamert, R.S., Lupton, D.W., Lithgow, T. ChemMedChem
Header	Ribosome/Antibiotic
Released	2018-05-10
Resolution	3.100
CATH Insert Date	24 Mar, 2019

PDB Images (48)

6ddd

PDB 6ddd

6ddd1

PDB Chain 6ddd1

6ddd2

PDB Chain 6ddd2

6ddda

PDB Chain 6ddda

6dddA

PDB Chain 6dddA

6dddB

PDB Chain 6dddB

6dddC

PDB Chain 6dddC

6dddD

PDB Chain 6dddD

6dddE

PDB Chain 6dddE

6dddF

PDB Chain 6dddF

6dddG

PDB Chain 6dddG

6dddH

PDB Chain 6dddH

6dddI

PDB Chain 6dddI

6dddJ

PDB Chain 6dddJ

6dddK

PDB Chain 6dddK

6dddL

PDB Chain 6dddL

6dddM

PDB Chain 6dddM

6dddN

PDB Chain 6dddN

6dddO

PDB Chain 6dddO

6dddP

PDB Chain 6dddP

6dddQ

PDB Chain 6dddQ

6dddR

PDB Chain 6dddR

6dddS

PDB Chain 6dddS

6dddV

PDB Chain 6dddV

6dddW

PDB Chain 6dddW

6dddX

PDB Chain 6dddX

6dddY

PDB Chain 6dddY

6dddZ

PDB Chain 6dddZ

6dddA00

CATH Domain 6dddA00

6dddB01

CATH Domain 6dddB01

6dddB02

CATH Domain 6dddB02

6dddB03

CATH Domain 6dddB03

6dddC00

CATH Domain 6dddC00

6dddD00

CATH Domain 6dddD00

6dddE00

CATH Domain 6dddE00

6dddF00

CATH Domain 6dddF00

6dddJ00

CATH Domain 6dddJ00

6dddK00

CATH Domain 6dddK00

6dddL00

CATH Domain 6dddL00

6dddM00

CATH Domain 6dddM00

6dddN01

CATH Domain 6dddN01

6dddO00

CATH Domain 6dddO00

6dddP00

CATH Domain 6dddP00

6dddQ00

CATH Domain 6dddQ00

6dddV00

CATH Domain 6dddV00

6dddW00

CATH Domain 6dddW00

6dddY01

CATH Domain 6dddY01

6dddZ00

CATH Domain 6dddZ00

PDB Prints

PDB Chains (27)

Chain ID	Date inserted into CATH	CATH Status
1	24 Mar, 2019	Rejected
2	24 Mar, 2019	Rejected
a	24 Mar, 2019	Write scan list
A	24 Mar, 2019	Chopped
B	24 Mar, 2019	Chopped
C	24 Mar, 2019	Chopped
D	24 Mar, 2019	Chopped
E	24 Mar, 2019	Chopped
F	24 Mar, 2019	Chopped
G	24 Mar, 2019	Holding pen
H	24 Mar, 2019	Holding pen
I	24 Mar, 2019	Holding pen
J	24 Mar, 2019	Chopped
K	24 Mar, 2019	Chopped
L	24 Mar, 2019	Chopped
M	24 Mar, 2019	Chopped
N	24 Mar, 2019	Chopped
O	24 Mar, 2019	Chopped
P	24 Mar, 2019	Chopped
Q	24 Mar, 2019	Chopped
R	24 Mar, 2019	Rejected
S	24 Mar, 2019	Holding pen
V	24 Mar, 2019	Chopped
W	24 Mar, 2019	Chopped
X	24 Mar, 2019	Holding pen
Y	24 Mar, 2019	Chopped
Z	24 Mar, 2019	Chopped

CATH Domains (20)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
6dddA00	25 Mar, 2019		Holding pen
6dddB01	25 Mar, 2019	2.40.50.140	Assigned
6dddB02	25 Mar, 2019		Holding pen
6dddB03	25 Mar, 2019	4.10.950.10	Assigned
6dddC00	25 Mar, 2019		Holding pen
6dddD00	25 Mar, 2019		Holding pen
6dddE00	25 Mar, 2019	3.90.470.10	Assigned
6dddF00	25 Mar, 2019	3.30.70.330	Assigned
6dddJ00	25 Mar, 2019		Holding pen
6dddK00	25 Mar, 2019		Holding pen
6dddL00	25 Mar, 2019		Holding pen
6dddM00	25 Mar, 2019	3.30.1390.20	Assigned
6dddN01	25 Mar, 2019		Holding pen
6dddO00	25 Mar, 2019	2.20.28.120	Assigned
6dddP00	25 Mar, 2019	1.10.287.3980	Assigned
6dddQ00	25 Mar, 2019		Holding pen
6dddV00	25 Mar, 2019		Holding pen
6dddW00	25 Mar, 2019	2.40.150.20	Assigned
6dddY01	25 Mar, 2019	3.90.1170.10	Assigned
6dddZ00	25 Mar, 2019	3.90.1030.10	Assigned

UniProtKB Entries (22)

Accession	Gene ID	Taxon	Description
Q2FW06	RL3_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L3
Q2FXQ0	RL35_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L35
Q2FW17	RL24_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L24
P60430	RL2_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L2
Q2FW07	RL4_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L4
P0A0F8	RL15_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L15
Q2FW14	RL29_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L29
Q2FXQ1	RL20_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L20
Q2FW11	RL22_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L22
Q2FY22	RL332_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L33 2
Q2FZ60	RL28_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L28
Q2FW16	RL14_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L14
Q2FW13	RL16_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L16
Q2FXT0	RL27_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L27
Q2FW22	RL18_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L18
Q2FW33	RL17_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L17
P0A0F8	RL15_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L15
Q2FW08	RL23_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L23
P0A0G2	RL30_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L30
T1YD75	T1YD75_STAAU	Staphylococcus aureus subsp. aureus CN1	50S ribosomal protein L34
Q2FW38	RL13_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L13
Q2FZ42	RL19_STAA8	Staphylococcus aureus subsp. aureus NCTC 8325	50S ribosomal protein L19