PDB 5yrt
PDB Information
| PDB | 5YRT |
| Method | X-RAY DIFFRACTION |
| Host Organism | Escherichia coli BL21 |
| Gene Source | Klebsiella oxytoca |
| Primary Citation | Direct Participation of a Peripheral Side Chain of a Corrin Ring in Coenzyme B12Catalysis.
Angew. Chem. Int. Ed. Engl.
|
| Header | Lyase |
| Released | 2017-11-10 |
| Resolution | 1.700 |
| CATH Insert Date | 23 Sep, 2018 |
PDB Images (29)
5yrt
PDB 5yrt
5yrtA
PDB Chain 5yrtA
5yrtB
PDB Chain 5yrtB
5yrtC
PDB Chain 5yrtC
5yrtD
PDB Chain 5yrtD
5yrtE
PDB Chain 5yrtE
5yrtF
PDB Chain 5yrtF
5yrtG
PDB Chain 5yrtG
5yrtH
PDB Chain 5yrtH
5yrtI
PDB Chain 5yrtI
5yrtJ
PDB Chain 5yrtJ
5yrtK
PDB Chain 5yrtK
5yrtL
PDB Chain 5yrtL
5yrtA00
CATH Domain 5yrtA00
5yrtB00
CATH Domain 5yrtB00
5yrtC01
CATH Domain 5yrtC01
5yrtC02
CATH Domain 5yrtC02
5yrtD00
CATH Domain 5yrtD00
5yrtE00
CATH Domain 5yrtE00
5yrtF01
CATH Domain 5yrtF01
5yrtF02
CATH Domain 5yrtF02
5yrtG00
CATH Domain 5yrtG00
5yrtH00
CATH Domain 5yrtH00
5yrtI01
CATH Domain 5yrtI01
5yrtI02
CATH Domain 5yrtI02
5yrtJ00
CATH Domain 5yrtJ00
5yrtK00
CATH Domain 5yrtK00
5yrtL01
CATH Domain 5yrtL01
5yrtL02
CATH Domain 5yrtL02
PDB Prints
PDB Chains (12)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| A | 23 Sep, 2018 | Chopped |
| B | 23 Sep, 2018 | Chopped |
| C | 23 Sep, 2018 | Chopped |
| D | 23 Sep, 2018 | Chopped |
| E | 23 Sep, 2018 | Chopped |
| F | 23 Sep, 2018 | Chopped |
| G | 23 Sep, 2018 | Chopped |
| H | 23 Sep, 2018 | Chopped |
| I | 23 Sep, 2018 | Chopped |
| J | 23 Sep, 2018 | Chopped |
| K | 23 Sep, 2018 | Chopped |
| L | 23 Sep, 2018 | Chopped |
CATH Domains (16)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5yrtA00 | 24 Sep, 2018 | 3.20.20.350 | Assigned |
| 5yrtB00 | 24 Sep, 2018 | 3.40.50.10150 | Assigned |
| 5yrtC01 | 24 Sep, 2018 | Holding pen | |
| 5yrtC02 | 24 Sep, 2018 | 1.10.1510.20 | Assigned |
| 5yrtD00 | 24 Sep, 2018 | 3.20.20.350 | Assigned |
| 5yrtE00 | 24 Sep, 2018 | 3.40.50.10150 | Assigned |
| 5yrtF01 | 24 Sep, 2018 | Holding pen | |
| 5yrtF02 | 24 Sep, 2018 | 1.10.1510.20 | Assigned |
| 5yrtG00 | 24 Sep, 2018 | 3.20.20.350 | Assigned |
| 5yrtH00 | 24 Sep, 2018 | 3.40.50.10150 | Assigned |
| 5yrtI01 | 24 Sep, 2018 | Holding pen | |
| 5yrtI02 | 24 Sep, 2018 | 1.10.1510.20 | Assigned |
| 5yrtJ00 | 24 Sep, 2018 | 3.20.20.350 | Assigned |
| 5yrtK00 | 24 Sep, 2018 | 3.40.50.10150 | Assigned |
| 5yrtL01 | 24 Sep, 2018 | Holding pen | |
| 5yrtL02 | 24 Sep, 2018 | 1.10.1510.20 | Assigned |
UniProtKB Entries (12)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| Q59470 | Q59470_KLEOX | Klebsiella oxytoca | Diol dehydrase alpha subunit |
| Q59471 | Q59471_KLEOX | Klebsiella oxytoca | Diol dehydrase beta subunit |
| Q59471 | Q59471_KLEOX | Klebsiella oxytoca | Diol dehydrase beta subunit |
| Q59471 | Q59471_KLEOX | Klebsiella oxytoca | Diol dehydrase beta subunit |
| Q59471 | Q59471_KLEOX | Klebsiella oxytoca | Diol dehydrase beta subunit |
| Q59472 | Q59472_KLEOX | Klebsiella oxytoca | Diol dehydrase gamma subunit |
| Q59470 | Q59470_KLEOX | Klebsiella oxytoca | Diol dehydrase alpha subunit |
| Q59472 | Q59472_KLEOX | Klebsiella oxytoca | Diol dehydrase gamma subunit |
| Q59470 | Q59470_KLEOX | Klebsiella oxytoca | Diol dehydrase alpha subunit |
| Q59472 | Q59472_KLEOX | Klebsiella oxytoca | Diol dehydrase gamma subunit |
| Q59472 | Q59472_KLEOX | Klebsiella oxytoca | Diol dehydrase gamma subunit |
| Q59470 | Q59470_KLEOX | Klebsiella oxytoca | Diol dehydrase alpha subunit |