PDB 5y88
PDB Information
| PDB | 5Y88 |
| Method | ELECTRON MICROSCOPY |
| Host Organism | |
| Gene Source | |
| Primary Citation | Structure of an Intron Lariat Spliceosome from Saccharomyces cerevisiae
Cell(Cambridge,Mass.)
|
| Header | Splicing |
| Released | 2017-08-20 |
| Resolution | 3.460 |
| CATH Insert Date | 05 Aug, 2018 |
PDB Images (60)
5y88
PDB 5y88
5y88a
PDB Chain 5y88a
5y88A
PDB Chain 5y88A
5y88b
PDB Chain 5y88b
5y88B
PDB Chain 5y88B
5y88c
PDB Chain 5y88c
5y88C
PDB Chain 5y88C
5y88d
PDB Chain 5y88d
5y88D
PDB Chain 5y88D
5y88e
PDB Chain 5y88e
5y88E
PDB Chain 5y88E
5y88f
PDB Chain 5y88f
5y88F
PDB Chain 5y88F
5y88g
PDB Chain 5y88g
5y88G
PDB Chain 5y88G
5y88h
PDB Chain 5y88h
5y88H
PDB Chain 5y88H
5y88i
PDB Chain 5y88i
5y88I
PDB Chain 5y88I
5y88j
PDB Chain 5y88j
5y88J
PDB Chain 5y88J
5y88k
PDB Chain 5y88k
5y88K
PDB Chain 5y88K
5y88l
PDB Chain 5y88l
5y88L
PDB Chain 5y88L
5y88m
PDB Chain 5y88m
5y88M
PDB Chain 5y88M
5y88n
PDB Chain 5y88n
5y88N
PDB Chain 5y88N
5y88o
PDB Chain 5y88o
5y88O
PDB Chain 5y88O
5y88p
PDB Chain 5y88p
5y88P
PDB Chain 5y88P
5y88q
PDB Chain 5y88q
5y88Q
PDB Chain 5y88Q
5y88r
PDB Chain 5y88r
5y88R
PDB Chain 5y88R
5y88s
PDB Chain 5y88s
5y88S
PDB Chain 5y88S
5y88t
PDB Chain 5y88t
5y88T
PDB Chain 5y88T
5y88U
PDB Chain 5y88U
5y88V
PDB Chain 5y88V
5y88W
PDB Chain 5y88W
5y88x
PDB Chain 5y88x
5y88b00
CATH Domain 5y88b00
5y88c00
CATH Domain 5y88c00
5y88d00
CATH Domain 5y88d00
5y88e00
CATH Domain 5y88e00
5y88f00
CATH Domain 5y88f00
5y88g00
CATH Domain 5y88g00
5y88i00
CATH Domain 5y88i00
5y88j00
CATH Domain 5y88j00
5y88k00
CATH Domain 5y88k00
5y88K00
CATH Domain 5y88K00
5y88l00
CATH Domain 5y88l00
5y88m00
CATH Domain 5y88m00
5y88n00
CATH Domain 5y88n00
5y88o00
CATH Domain 5y88o00
5y88p00
CATH Domain 5y88p00
PDB Prints
PDB Chains (44)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| a | 05 Aug, 2018 | Holding pen |
| A | 05 Aug, 2018 | Holding pen |
| b | 05 Aug, 2018 | Chopped |
| B | 05 Aug, 2018 | Rejected |
| c | 05 Aug, 2018 | Chopped |
| C | 05 Aug, 2018 | Holding pen |
| d | 05 Aug, 2018 | Chopped |
| D | 05 Aug, 2018 | Rejected |
| e | 05 Aug, 2018 | Chopped |
| E | 05 Aug, 2018 | Rejected |
| f | 05 Aug, 2018 | Chopped |
| F | 05 Aug, 2018 | Rejected |
| g | 05 Aug, 2018 | Chopped |
| G | 05 Aug, 2018 | Holding pen |
| h | 05 Aug, 2018 | Holding pen |
| H | 05 Aug, 2018 | Holding pen |
| i | 05 Aug, 2018 | Chopped |
| I | 05 Aug, 2018 | Holding pen |
| j | 05 Aug, 2018 | Chopped |
| J | 05 Aug, 2018 | Holding pen |
| k | 05 Aug, 2018 | Chopped |
| K | 05 Aug, 2018 | Chopped |
| l | 05 Aug, 2018 | Chopped |
| L | 05 Aug, 2018 | Holding pen |
| m | 05 Aug, 2018 | Chopped |
| M | 05 Aug, 2018 | Holding pen |
| n | 05 Aug, 2018 | Chopped |
| N | 05 Aug, 2018 | Holding pen |
| o | 05 Aug, 2018 | Chopped |
| O | 05 Aug, 2018 | Holding pen |
| p | 05 Aug, 2018 | Chopped |
| P | 05 Aug, 2018 | Holding pen |
| q | 05 Aug, 2018 | Holding pen |
| Q | 05 Aug, 2018 | Holding pen |
| r | 05 Aug, 2018 | Holding pen |
| R | 05 Aug, 2018 | Write scan list |
| s | 05 Aug, 2018 | Holding pen |
| S | 05 Aug, 2018 | Rejected |
| t | 05 Aug, 2018 | Holding pen |
| T | 05 Aug, 2018 | Write scan list |
| U | 05 Aug, 2018 | Write scan list |
| V | 05 Aug, 2018 | Write scan list |
| W | 05 Aug, 2018 | Holding pen |
| x | 05 Aug, 2018 | Rejected |
CATH Domains (15)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5y88b00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88c00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88d00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88e00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88f00 | 06 Aug, 2018 | Holding pen | |
| 5y88g00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88i00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88j00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88k00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88K00 | 06 Aug, 2018 | Holding pen | |
| 5y88l00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88m00 | 06 Aug, 2018 | Holding pen | |
| 5y88n00 | 06 Aug, 2018 | 2.30.30.100 | Assigned |
| 5y88o00 | 06 Aug, 2018 | Holding pen | |
| 5y88p00 | 06 Aug, 2018 | 3.30.70.330 | Assigned |
UniProtKB Entries (30)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| P32523 | PRP19_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 19 |
| Q12046 | CWC2_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CWC2 |
| Q06217 | SMD2_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D2 |
| P40204 | RUXG_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein G |
| P40018 | RSMB_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein-associated protein B |
| P53131 | PRP43_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 |
| Q06217 | SMD2_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D2 |
| Q03654 | CEF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CEF1 |
| Q02260 | SMD1_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D1 |
| Q02260 | SMD1_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D1 |
| P43321 | SMD3_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D3 |
| P54999 | RUXF_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein F |
| P32523 | PRP19_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 19 |
| Q08963 | RU2A_YEAST | Saccharomyces cerevisiae S288C | U2 small nuclear ribonucleoprotein A' |
| Q12309 | CLF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CLF1 |
| Q12330 | RUXE_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein E |
| P33334 | PRP8_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor 8 |
| Q12417 | PRP46_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor PRP46 |
| P36048 | SN114_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor SNU114 |
| P40204 | RUXG_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein G |
| P54999 | RUXF_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein F |
| P32523 | PRP19_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 19 |
| P32523 | PRP19_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 19 |
| P40567 | MSL1_YEAST | Saccharomyces cerevisiae S288C | U2 small nuclear ribonucleoprotein B'' |
| P40968 | PRP17_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-processing factor 17 |
| Q12330 | RUXE_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein E |
| P43321 | SMD3_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein Sm D3 |
| P52868 | CWC23_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor CWC23 |
| Q04048 | SYF1_YEAST | Saccharomyces cerevisiae S288C | Pre-mRNA-splicing factor SYF1 |
| P40018 | RSMB_YEAST | Saccharomyces cerevisiae S288C | Small nuclear ribonucleoprotein-associated protein B |