PDB 5xym

PDB Links
Overview

PDB Information

PDB	5XYM
Method	ELECTRON MICROSCOPY
Host Organism
Gene Source
Primary Citation	Cryo-EM structure of Mycobacterium smegmatis ribosome reveals two unidentified ribosomal proteins close to the functional centers. Li, Z., Ge, X., Zhang, Y., Zheng, L., Sanyal, S., Gao, N. Protein Cell
Header	Ribosome
Released	2017-07-09
Resolution	3.080
CATH Insert Date	14 Nov, 2017

PDB Images (58)

5xym

PDB 5xym

5xym0

PDB Chain 5xym0

5xym1

PDB Chain 5xym1

5xym2

PDB Chain 5xym2

5xym3

PDB Chain 5xym3

5xym4

PDB Chain 5xym4

5xyma

PDB Chain 5xyma

5xymA

PDB Chain 5xymA

5xymB

PDB Chain 5xymB

5xymC

PDB Chain 5xymC

5xymD

PDB Chain 5xymD

5xymE

PDB Chain 5xymE

5xymF

PDB Chain 5xymF

5xymG

PDB Chain 5xymG

5xymH

PDB Chain 5xymH

5xymJ

PDB Chain 5xymJ

5xymK

PDB Chain 5xymK

5xymL

PDB Chain 5xymL

5xymM

PDB Chain 5xymM

5xymN

PDB Chain 5xymN

5xymO

PDB Chain 5xymO

5xymP

PDB Chain 5xymP

5xymQ

PDB Chain 5xymQ

5xymR

PDB Chain 5xymR

5xymS

PDB Chain 5xymS

5xymT

PDB Chain 5xymT

5xymU

PDB Chain 5xymU

5xymV

PDB Chain 5xymV

5xymW

PDB Chain 5xymW

5xymX

PDB Chain 5xymX

5xymY

PDB Chain 5xymY

5xymZ

PDB Chain 5xymZ

5xym000

CATH Domain 5xym000

5xym100

CATH Domain 5xym100

5xym200

CATH Domain 5xym200

5xym300

CATH Domain 5xym300

5xymC01

CATH Domain 5xymC01

5xymC02

CATH Domain 5xymC02

5xymC03

CATH Domain 5xymC03

5xymD00

CATH Domain 5xymD00

5xymE00

CATH Domain 5xymE00

5xymF00

CATH Domain 5xymF00

5xymJ00

CATH Domain 5xymJ00

5xymK00

CATH Domain 5xymK00

5xymM01

CATH Domain 5xymM01

5xymN00

CATH Domain 5xymN00

5xymO01

CATH Domain 5xymO01

5xymP00

CATH Domain 5xymP00

5xymQ00

CATH Domain 5xymQ00

5xymR00

CATH Domain 5xymR00

5xymS00

CATH Domain 5xymS00

5xymT00

CATH Domain 5xymT00

5xymU00

CATH Domain 5xymU00

5xymV01

CATH Domain 5xymV01

5xymV02

CATH Domain 5xymV02

5xymX00

CATH Domain 5xymX00

5xymY00

CATH Domain 5xymY00

5xymZ00

CATH Domain 5xymZ00

PDB Prints

PDB Chains (31)

Chain ID	Date inserted into CATH	CATH Status
0	14 Nov, 2017	Chopped
1	14 Nov, 2017	Chopped
2	14 Nov, 2017	Chopped
3	14 Nov, 2017	Chopped
4	14 Nov, 2017	Rejected
a	14 Nov, 2017	Rejected
A	14 Nov, 2017	Rejected
B	14 Nov, 2017	Rejected
C	14 Nov, 2017	Chopped
D	14 Nov, 2017	Chopped
E	14 Nov, 2017	Chopped
F	14 Nov, 2017	Chopped
G	14 Nov, 2017	Holding pen
H	14 Nov, 2017	Rejected
J	14 Nov, 2017	Chopped
K	14 Nov, 2017	Chopped
L	14 Nov, 2017	Holding pen
M	14 Nov, 2017	Chopped
N	14 Nov, 2017	Chopped
O	14 Nov, 2017	Chopped
P	14 Nov, 2017	Chopped
Q	14 Nov, 2017	Chopped
R	14 Nov, 2017	Chopped
S	14 Nov, 2017	Chopped
T	14 Nov, 2017	Chopped
U	14 Nov, 2017	Chopped
V	14 Nov, 2017	Chopped
W	14 Nov, 2017	Holding pen
X	14 Nov, 2017	Chopped
Y	14 Nov, 2017	Chopped
Z	14 Nov, 2017	Chopped

CATH Domains (26)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5xym000	16 Dec, 2017		Holding pen
5xym100	10 Dec, 2017	2.20.28.120	Assigned
5xym200	10 Dec, 2017	1.10.287.3980	Assigned
5xym300	10 Dec, 2017		Holding pen
5xymC01	10 Dec, 2017	2.40.50.140	Assigned
5xymC02	10 Dec, 2017		Holding pen
5xymC03	10 Dec, 2017	4.10.950.10	Assigned
5xymD00	10 Dec, 2017		Holding pen
5xymE00	10 Dec, 2017		Holding pen
5xymF00	21 Feb, 2018		Holding pen
5xymJ00	14 Dec, 2017		Holding pen
5xymK00	10 Dec, 2017	2.40.150.20	Assigned
5xymM01	10 Dec, 2017	3.90.1170.10	Assigned
5xymN00	10 Dec, 2017	3.90.1030.10	Assigned
5xymO01	10 Dec, 2017	3.30.420.100	Assigned
5xymP00	10 Dec, 2017		Holding pen
5xymQ00	10 Dec, 2017		Holding pen
5xymR00	10 Dec, 2017		Holding pen
5xymS00	10 Dec, 2017	3.90.470.10	Assigned
5xymT00	10 Dec, 2017	3.30.70.330	Assigned
5xymU00	10 Dec, 2017		Holding pen
5xymV01	16 Dec, 2017		Holding pen
5xymV02	16 Dec, 2017		Holding pen
5xymX00	16 Dec, 2017		Holding pen
5xymY00	10 Dec, 2017		Holding pen
5xymZ00	10 Dec, 2017	3.30.1390.20	Assigned

UniProtKB Entries (25)

Accession	Gene ID	Taxon	Description
A0QSL9	RL17_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L17
A0R7K0	RL34_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L34
A0R150	RL27_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L27
A0R551	RL332_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L33 2
A0QSG0	RL24_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L24
A0QSD1	RL3_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L3
A0QSG4	RL6_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L6
A0QSG8	A0QSG8_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L15
A0QSD3	RL23_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L23
A0QSG5	A0QSG5_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L18
A0QV42	RL19_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L19
A0QSF9	RL14_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L14
A0QYU6	RL20_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L20
A0QSD9	RL29_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L29
A0QSD8	RL16_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L16
A0R3D2	A0R3D2_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L25
A0QSD6	RL22_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L22
A0QSD4	RL2_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L2
A0QSG1	RL5_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L5
A0QSD2	RL4_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L4
A0QSG7	RL30_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L30
A0QYU7	RL35_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L35
A0R7F6	RL9_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L9
A0QV03	A0QV03_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L28
A0QSP8	RL13_MYCS2	Mycolicibacterium smegmatis MC2 155	50S ribosomal protein L13