PDB 5ws5

PDB Links
Overview

PDB Information

PDB	5WS5
Method	X-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation	Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL. Suga, M., Akita, F., Sugahara, M., Kubo, M., Nakajima, Y., Nakane, T., Yamashita, K., Umena, Y., Nakabayashi, M., Yamane, T., Nakano, T., Suzuki, M., Masuda, T., Inoue, S., Kimura, T., Nomura, T., Yonekura, S., Yu, L.J., Sakamoto, T., Motomura, T., Chen, J.H., Kato, Y., Noguchi, T., Tono, K., Joti, Y., Kameshima, T., Hatsui, T., Nango, E., Tanaka, R., Naitow, H., Matsuura, Y., Yamashita, A., Yamamoto, M., Nureki, O., Yabashi, M., Ishikawa, T., Iwata, S., Shen, J.R. Nature
Header	Photosynthesis
Released	2016-12-05
Resolution	2.350
CATH Insert Date	07 May, 2017

PDB Images (66)

5ws5

PDB 5ws5

5ws5a

PDB Chain 5ws5a

5ws5A

PDB Chain 5ws5A

5ws5b

PDB Chain 5ws5b

5ws5B

PDB Chain 5ws5B

5ws5c

PDB Chain 5ws5c

5ws5C

PDB Chain 5ws5C

5ws5d

PDB Chain 5ws5d

5ws5D

PDB Chain 5ws5D

5ws5e

PDB Chain 5ws5e

5ws5E

PDB Chain 5ws5E

5ws5f

PDB Chain 5ws5f

5ws5F

PDB Chain 5ws5F

5ws5h

PDB Chain 5ws5h

5ws5H

PDB Chain 5ws5H

5ws5i

PDB Chain 5ws5i

5ws5I

PDB Chain 5ws5I

5ws5j

PDB Chain 5ws5j

5ws5J

PDB Chain 5ws5J

5ws5k

PDB Chain 5ws5k

5ws5K

PDB Chain 5ws5K

5ws5l

PDB Chain 5ws5l

5ws5L

PDB Chain 5ws5L

5ws5m

PDB Chain 5ws5m

5ws5M

PDB Chain 5ws5M

5ws5o

PDB Chain 5ws5o

5ws5O

PDB Chain 5ws5O

5ws5R

PDB Chain 5ws5R

5ws5t

PDB Chain 5ws5t

5ws5T

PDB Chain 5ws5T

5ws5u

PDB Chain 5ws5u

5ws5U

PDB Chain 5ws5U

5ws5v

PDB Chain 5ws5v

5ws5V

PDB Chain 5ws5V

5ws5x

PDB Chain 5ws5x

5ws5X

PDB Chain 5ws5X

5ws5y

PDB Chain 5ws5y

5ws5Y

PDB Chain 5ws5Y

5ws5z

PDB Chain 5ws5z

5ws5Z

PDB Chain 5ws5Z

5ws5a00

CATH Domain 5ws5a00

5ws5A00

CATH Domain 5ws5A00

5ws5b01

CATH Domain 5ws5b01

5ws5B01

CATH Domain 5ws5B01

5ws5b02

CATH Domain 5ws5b02

5ws5B02

CATH Domain 5ws5B02

5ws5c01

CATH Domain 5ws5c01

5ws5C01

CATH Domain 5ws5C01

5ws5c02

CATH Domain 5ws5c02

5ws5C02

CATH Domain 5ws5C02

5ws5d00

CATH Domain 5ws5d00

5ws5D00

CATH Domain 5ws5D00

5ws5e00

CATH Domain 5ws5e00

5ws5E00

CATH Domain 5ws5E00

5ws5h01

CATH Domain 5ws5h01

5ws5H01

CATH Domain 5ws5H01

5ws5o01

CATH Domain 5ws5o01

5ws5O01

CATH Domain 5ws5O01

5ws5o02

CATH Domain 5ws5o02

5ws5O02

CATH Domain 5ws5O02

5ws5u01

CATH Domain 5ws5u01

5ws5U01

CATH Domain 5ws5U01

5ws5v00

CATH Domain 5ws5v00

5ws5V00

CATH Domain 5ws5V00

5ws5z00

CATH Domain 5ws5z00

5ws5Z00

CATH Domain 5ws5Z00

PDB Prints

PDB Chains (39)

Chain ID	Date inserted into CATH	CATH Status
a	08 May, 2017	Chopped
A	08 May, 2017	Chopped
b	08 May, 2017	Chopped
B	08 May, 2017	Chopped
c	08 May, 2017	Chopped
C	08 May, 2017	Chopped
d	08 May, 2017	Chopped
D	08 May, 2017	Chopped
e	08 May, 2017	Chopped
E	08 May, 2017	Chopped
f	08 May, 2017	Rejected
F	08 May, 2017	Rejected
h	08 May, 2017	Chopped
H	08 May, 2017	Chopped
i	08 May, 2017	Rejected
I	08 May, 2017	Rejected
j	08 May, 2017	Rejected
J	08 May, 2017	Rejected
k	08 May, 2017	Rejected
K	08 May, 2017	Rejected
l	08 May, 2017	Rejected
L	08 May, 2017	Rejected
m	08 May, 2017	Rejected
M	08 May, 2017	Rejected
o	08 May, 2017	Chopped
O	08 May, 2017	Chopped
R	08 May, 2017	Rejected
t	08 May, 2017	Rejected
T	08 May, 2017	Rejected
u	08 May, 2017	Chopped
U	08 May, 2017	Chopped
v	08 May, 2017	Chopped
V	08 May, 2017	Chopped
x	08 May, 2017	Rejected
X	08 May, 2017	Rejected
y	08 May, 2017	Rejected
Y	08 May, 2017	Rejected
z	08 May, 2017	Chopped
Z	08 May, 2017	Chopped

CATH Domains (26)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5ws5a00	27 May, 2017		Holding pen
5ws5A00	26 May, 2017		Holding pen
5ws5b01	26 May, 2017		Holding pen
5ws5B01	27 May, 2017		Holding pen
5ws5b02	26 May, 2017	3.10.680.10	Assigned
5ws5B02	27 May, 2017	3.10.680.10	Assigned
5ws5c01	26 May, 2017		Holding pen
5ws5C01	27 May, 2017		Holding pen
5ws5c02	26 May, 2017	1.10.10.670	Assigned
5ws5C02	27 May, 2017	1.10.10.670	Assigned
5ws5d00	26 May, 2017		Holding pen
5ws5D00	27 May, 2017		Holding pen
5ws5e00	26 May, 2017	1.20.5.860	Assigned
5ws5E00	27 May, 2017	1.20.5.860	Assigned
5ws5h01	26 May, 2017	1.20.5.880	Assigned
5ws5H01	27 May, 2017	1.20.5.880	Assigned
5ws5o01	27 May, 2017	2.40.160.30	Assigned
5ws5O01	26 May, 2017	2.40.160.30	Assigned
5ws5o02	27 May, 2017	3.30.2050.10	Assigned
5ws5O02	26 May, 2017	3.30.2050.10	Assigned
5ws5u01	27 May, 2017	1.10.150.320	Assigned
5ws5U01	27 May, 2017	1.10.150.320	Assigned
5ws5v00	26 May, 2017	1.10.760.10	Assigned
5ws5V00	27 May, 2017	1.10.760.10	Assigned
5ws5z00	27 May, 2017	1.10.287.740	Assigned
5ws5Z00	27 May, 2017	1.10.287.740	Assigned

UniProtKB Entries (24)

Accession	Gene ID	Taxon	Description
D0VWR7	PSBC_THEVL	Thermosynechococcus vulcanus	Photosystem II CP43 reaction center protein
D0VWR8	PSBD_THEVL	Thermosynechococcus vulcanus	Photosystem II D2 protein
D0VWR4	PSBX_THEVL	Thermosynechococcus vulcanus	Photosystem II reaction center protein X
P51765	PSBA_THEVL	Thermosynechococcus vulcanus	Photosystem II protein D1
D0VWR5	PSBZ_THEVL	Thermosynechococcus vulcanus	Photosystem II reaction center protein Z
P0A387	CY550_THEVL	Thermosynechococcus vulcanus	Cytochrome c-550
D0VWR4	PSBX_THEVL	Thermosynechococcus vulcanus	Photosystem II reaction center protein X
P51765	PSBA_THEVL	Thermosynechococcus vulcanus	Photosystem II protein D1
D0VWR1	PSBB_THEVL	Thermosynechococcus vulcanus	Photosystem II CP47 reaction center protein
P56152	PSBU_THEVL	Thermosynechococcus vulcanus	Photosystem II 12 kDa extrinsic protein
P0A387	CY550_THEVL	Thermosynechococcus vulcanus	Cytochrome c-550
P12238	PSBE_THEVL	Thermosynechococcus vulcanus	Cytochrome b559 subunit alpha
P12238	PSBE_THEVL	Thermosynechococcus vulcanus	Cytochrome b559 subunit alpha
P19052	PSBH_THEVL	Thermosynechococcus vulcanus	Photosystem II reaction center protein H
D0VWR8	PSBD_THEVL	Thermosynechococcus vulcanus	Photosystem II D2 protein
D0VWR2	PSBO_THEVL	Thermosynechococcus vulcanus	Photosystem II manganese-stabilizing polypeptide
D0VWR5	PSBZ_THEVL	Thermosynechococcus vulcanus	Photosystem II reaction center protein Z
P56152	PSBU_THEVL	Thermosynechococcus vulcanus	Photosystem II 12 kDa extrinsic protein
D0VWR7	PSBC_THEVL	Thermosynechococcus vulcanus	Photosystem II CP43 reaction center protein
Q7DGD4	PSBJ_THEVL	Thermosynechococcus vulcanus	Photosystem II reaction center protein J
Q7DGD4	PSBJ_THEVL	Thermosynechococcus vulcanus	Photosystem II reaction center protein J
P19052	PSBH_THEVL	Thermosynechococcus vulcanus	Photosystem II reaction center protein H
D0VWR2	PSBO_THEVL	Thermosynechococcus vulcanus	Photosystem II manganese-stabilizing polypeptide
D0VWR1	PSBB_THEVL	Thermosynechococcus vulcanus	Photosystem II CP47 reaction center protein