PDB 5vzj
PDB Information
| PDB | 5VZJ |
| Method | X-RAY DIFFRACTION |
| Host Organism | ESCHERICHIA COLI |
| Gene Source | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) |
| Primary Citation | Structure and reconstitution of yeast Mpp6-nuclear exosome complexes reveals that Mpp6 stimulates RNA decay and recruits the Mtr4 helicase.
Elife
|
| Header | Hydrolase/Rna |
| Released | 2017-05-28 |
| Resolution | 3.300 |
| CATH Insert Date | 14 Nov, 2017 |
PDB Images (31)
5vzj
PDB 5vzj
5vzjA
PDB Chain 5vzjA
5vzjB
PDB Chain 5vzjB
5vzjC
PDB Chain 5vzjC
5vzjD
PDB Chain 5vzjD
5vzjE
PDB Chain 5vzjE
5vzjF
PDB Chain 5vzjF
5vzjG
PDB Chain 5vzjG
5vzjH
PDB Chain 5vzjH
5vzjI
PDB Chain 5vzjI
5vzjJ
PDB Chain 5vzjJ
5vzjK
PDB Chain 5vzjK
5vzjL
PDB Chain 5vzjL
5vzjM
PDB Chain 5vzjM
5vzjN
PDB Chain 5vzjN
5vzjA00
CATH Domain 5vzjA00
5vzjB00
CATH Domain 5vzjB00
5vzjC00
CATH Domain 5vzjC00
5vzjD00
CATH Domain 5vzjD00
5vzjE00
CATH Domain 5vzjE00
5vzjF00
CATH Domain 5vzjF00
5vzjG01
CATH Domain 5vzjG01
5vzjG02
CATH Domain 5vzjG02
5vzjG03
CATH Domain 5vzjG03
5vzjH01
CATH Domain 5vzjH01
5vzjH02
CATH Domain 5vzjH02
5vzjK01
CATH Domain 5vzjK01
5vzjK02
CATH Domain 5vzjK02
5vzjK03
CATH Domain 5vzjK03
5vzjK04
CATH Domain 5vzjK04
5vzjK05
CATH Domain 5vzjK05
PDB Prints
PDB Chains (14)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| A | 14 Nov, 2017 | Chopped |
| B | 14 Nov, 2017 | Chopped |
| C | 14 Nov, 2017 | Chopped |
| D | 14 Nov, 2017 | Chopped |
| E | 14 Nov, 2017 | Chopped |
| F | 14 Nov, 2017 | Chopped |
| G | 14 Nov, 2017 | Chopped |
| H | 14 Nov, 2017 | Chopped |
| I | 14 Nov, 2017 | Holding pen |
| J | 14 Nov, 2017 | Holding pen |
| K | 14 Nov, 2017 | Chopped |
| L | 14 Nov, 2017 | Rejected |
| M | 14 Nov, 2017 | Rejected |
| N | 14 Nov, 2017 | Rejected |
CATH Domains (16)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5vzjA00 | 10 Dec, 2017 | 3.30.230.70 | Assigned |
| 5vzjB00 | 10 Dec, 2017 | 3.30.230.70 | Assigned |
| 5vzjC00 | 10 Dec, 2017 | 3.30.230.70 | Assigned |
| 5vzjD00 | 10 Dec, 2017 | 3.30.230.70 | Assigned |
| 5vzjE00 | 10 Dec, 2017 | 3.30.230.70 | Assigned |
| 5vzjF00 | 10 Dec, 2017 | 3.30.230.70 | Assigned |
| 5vzjG01 | 10 Dec, 2017 | 2.40.50.100 | Assigned |
| 5vzjG02 | 10 Dec, 2017 | 2.40.50.140 | Assigned |
| 5vzjG03 | 10 Dec, 2017 | 3.30.1370.10 | Assigned |
| 5vzjH01 | 10 Dec, 2017 | 2.40.50.100 | Assigned |
| 5vzjH02 | 10 Dec, 2017 | Holding pen | |
| 5vzjK01 | 21 Feb, 2018 | Holding pen | |
| 5vzjK02 | 21 Feb, 2018 | Holding pen | |
| 5vzjK03 | 21 Feb, 2018 | 2.40.50.700 | Assigned |
| 5vzjK04 | 21 Feb, 2018 | Holding pen | |
| 5vzjK05 | 21 Feb, 2018 | 2.40.50.140 | Assigned |
UniProtKB Entries (11)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| P53256 | RRP46_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP46 |
| Q12277 | RRP42_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP42 |
| P38792 | RRP4_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP4 |
| P53859 | CSL4_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component CSL4 |
| P25359 | RRP43_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP43 |
| P48240 | MTR3_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component MTR3 |
| Q05636 | RRP45_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP45 |
| Q08285 | RRP40_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component RRP40 |
| Q12149 | RRP6_YEAST | Saccharomyces cerevisiae S288C | Exosome complex exonuclease RRP6 |
| Q08162 | RRP44_YEAST | Saccharomyces cerevisiae S288C | Exosome complex exonuclease DIS3 |
| P46948 | RRP41_YEAST | Saccharomyces cerevisiae S288C | Exosome complex component SKI6 |