PDB 5opt

PDB Links
Overview

PDB Information

PDB	5OPT
Method	ELECTRON MICROSCOPY
Host Organism	Trypanosoma cruzi
Gene Source	Trypanosoma cruzi (strain CL Brener)
Primary Citation	The cryo-EM Structure of a Novel 40S Kinetoplastid-Specific Ribosomal Protein. Brito Querido, J., Mancera-Martinez, E., Vicens, Q., Bochler, A., Chicher, J., Simonetti, A., Hashem, Y. Structure
Header	Ribosome
Released	2017-08-10
Resolution	4.000
CATH Insert Date	17 Dec, 2017

PDB Images (70)

5opt

PDB 5opt

5opta

PDB Chain 5opta

5optb

PDB Chain 5optb

5optc

PDB Chain 5optc

5optd

PDB Chain 5optd

5opte

PDB Chain 5opte

5optE

PDB Chain 5optE

5optf

PDB Chain 5optf

5optg

PDB Chain 5optg

5opth

PDB Chain 5opth

5opti

PDB Chain 5opti

5optj

PDB Chain 5optj

5optk

PDB Chain 5optk

5optl

PDB Chain 5optl

5optL

PDB Chain 5optL

5optm

PDB Chain 5optm

5optM

PDB Chain 5optM

5optn

PDB Chain 5optn

5opto

PDB Chain 5opto

5optO

PDB Chain 5optO

5optp

PDB Chain 5optp

5optP

PDB Chain 5optP

5optq

PDB Chain 5optq

5optQ

PDB Chain 5optQ

5optr

PDB Chain 5optr

5optR

PDB Chain 5optR

5optS

PDB Chain 5optS

5optt

PDB Chain 5optt

5optT

PDB Chain 5optT

5optu

PDB Chain 5optu

5optU

PDB Chain 5optU

5optV

PDB Chain 5optV

5optW

PDB Chain 5optW

5optX

PDB Chain 5optX

5optY

PDB Chain 5optY

5optZ

PDB Chain 5optZ

5opta00

CATH Domain 5opta00

5optb01

CATH Domain 5optb01

5optd01

CATH Domain 5optd01

5optd02

CATH Domain 5optd02

5opte01

CATH Domain 5opte01

5opte02

CATH Domain 5opte02

5optf01

CATH Domain 5optf01

5optg00

CATH Domain 5optg00

5opti00

CATH Domain 5opti00

5optj00

CATH Domain 5optj00

5optk01

CATH Domain 5optk01

5optl00

CATH Domain 5optl00

5optL01

CATH Domain 5optL01

5optL02

CATH Domain 5optL02

5optL03

CATH Domain 5optL03

5optM00

CATH Domain 5optM00

5optm01

CATH Domain 5optm01

5optm02

CATH Domain 5optm02

5optn00

CATH Domain 5optn00

5optO00

CATH Domain 5optO00

5optp01

CATH Domain 5optp01

5optQ00

CATH Domain 5optQ00

5optr00

CATH Domain 5optr00

5optR01

CATH Domain 5optR01

5optR02

CATH Domain 5optR02

5optS00

CATH Domain 5optS00

5optt00

CATH Domain 5optt00

5optT00

CATH Domain 5optT00

5optU00

CATH Domain 5optU00

5optV00

CATH Domain 5optV00

5optW01

CATH Domain 5optW01

5optX00

CATH Domain 5optX00

5optY00

CATH Domain 5optY00

5optZ01

CATH Domain 5optZ01

PDB Prints

PDB Chains (35)

Chain ID	Date inserted into CATH	CATH Status
a	17 Dec, 2017	Chopped
b	17 Dec, 2017	Chopped
c	17 Dec, 2017	Holding pen
d	17 Dec, 2017	Chopped
e	17 Dec, 2017	Chopped
E	17 Dec, 2017	Rejected
f	17 Dec, 2017	Chopped
g	17 Dec, 2017	Chopped
h	17 Dec, 2017	Domchop review
i	17 Dec, 2017	Chopped
j	17 Dec, 2017	Chopped
k	17 Dec, 2017	Chopped
l	17 Dec, 2017	Chopped
L	17 Dec, 2017	Chopped
m	17 Dec, 2017	Chopped
M	17 Dec, 2017	Chopped
n	17 Dec, 2017	Chopped
o	17 Dec, 2017	Domchop review
O	17 Dec, 2017	Chopped
p	17 Dec, 2017	Chopped
P	17 Dec, 2017	Domchop review
q	17 Dec, 2017	Rejected
Q	17 Dec, 2017	Chopped
r	17 Dec, 2017	Chopped
R	17 Dec, 2017	Chopped
S	17 Dec, 2017	Chopped
t	17 Dec, 2017	Chopped
T	17 Dec, 2017	Chopped
u	17 Dec, 2017	Domchop review
U	17 Dec, 2017	Chopped
V	17 Dec, 2017	Chopped
W	17 Dec, 2017	Chopped
X	17 Dec, 2017	Chopped
Y	17 Dec, 2017	Chopped
Z	17 Dec, 2017	Chopped

CATH Domains (34)

Domain ID	Date inserted into CATH	Superfamily	CATH Status
5opta00	22 Dec, 2017		Holding pen
5optb01	22 Dec, 2017		Holding pen
5optd01	22 Dec, 2017	3.30.160.20	Assigned
5optd02	22 Dec, 2017	3.30.230.10	Assigned
5opte01	22 Dec, 2017	3.30.1370.30	Assigned
5opte02	22 Dec, 2017	3.30.1490.10	Assigned
5optf01	22 Dec, 2017	3.40.50.10490	Assigned
5optg00	22 Dec, 2017	3.30.1230.20	Assigned
5opti00	22 Dec, 2017	3.30.1330.30	Assigned
5optj00	21 Feb, 2018		Holding pen
5optk01	22 Dec, 2017	1.10.60.20	Assigned
5optl00	22 Dec, 2017	3.30.70.600	Assigned
5optL01	22 Dec, 2017	3.10.290.10	Assigned
5optL02	22 Dec, 2017	2.40.50.740	Assigned
5optL03	22 Dec, 2017	2.30.30.30	Assigned
5optM00	22 Dec, 2017		Holding pen
5optm01	22 Dec, 2017	3.30.300.20	Assigned
5optm02	22 Dec, 2017	3.30.1140.32	Assigned
5optn00	22 Dec, 2017	1.10.10.10	Assigned
5optO00	22 Dec, 2017	1.10.455.10	Assigned
5optp01	22 Dec, 2017	2.130.10.10	Assigned
5optQ00	21 Feb, 2018		Write scan list
5optr00	22 Dec, 2017	3.30.230.10	Assigned
5optR01	22 Dec, 2017		Holding pen
5optR02	22 Dec, 2017	1.10.287.10	Assigned
5optS00	22 Dec, 2017	2.20.25.100	Assigned
5optt00	22 Dec, 2017		Holding pen
5optT00	22 Dec, 2017	3.30.1740.20	Assigned
5optU00	22 Dec, 2017	2.40.50.140	Assigned
5optV00	22 Dec, 2017	3.30.420.80	Assigned
5optW01	22 Dec, 2017		Holding pen
5optX00	22 Dec, 2017	2.40.50.1000	Assigned
5optY00	22 Dec, 2017	3.30.70.3370	Assigned
5optZ01	22 Dec, 2017		Holding pen

UniProtKB Entries (31)

Accession	Gene ID	Taxon	Description
Q4DTN2	Q4DTN2_TRYCC	Trypanosoma cruzi strain CL Brener	Activated protein kinase C receptor, putative
Q4DU83	Q4DU83_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S8
Q4D6I5	Q4D6I5_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S14, putative
Q4DN73	Q4DN73_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S27, putative
Q4DIZ9	Q4DIZ9_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S2, putative
Q4DSU0	Q4DSU0_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S6
Q4DGZ5	Q4DGZ5_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S15, putative
Q4CQ63	Q4CQ63_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein SA
Q4E3M0	Q4E3M0_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S21, putative
Q4E088	Q4E088_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S10, putative
Q4DTX6	Q4DTX6_TRYCC	Trypanosoma cruzi strain CL Brener	Ribosomal protein S25, putative
Q4DJY1	Q4DJY1_TRYCC	Trypanosoma cruzi strain CL Brener	Ribosomal protein S19, putative
Q4E093	Q4E093_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S18, putative
Q4DC38	Q4DC38_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S13, putative
Q4DK40	Q4DK40_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S17, putative
Q4D5P4	Q4D5P4_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S4
Q4DY32	Q4DY32_TRYCC	Trypanosoma cruzi strain CL Brener	RNA-binding protein, putative
Q4E0Q3	Q4E0Q3_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S5, putative
Q4D1T6	Q4D1T6_TRYCC	Trypanosoma cruzi strain CL Brener	Ubiquitin/ribosomal protein S27a, putative
Q4DMK9	Q4DMK9_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S3, putative
Q4E0N6	Q4E0N6_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S15a, putative
Q4CSL1	Q4CSL1_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S12
Q4DEK4	Q4DEK4_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S16, putative
Q4D7C8	Q4D7C8_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S33, putative
Q4D4S1	Q4D4S1_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S9, putative
Q4DW38	Q4DW38_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S24
Q4CYE4	Q4CYE4_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S26
Q4D0U7	Q4D0U7_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S11, putative
Q4DTQ1	Q4DTQ1_TRYCC	Trypanosoma cruzi strain CL Brener	40S ribosomal protein S23, putative
Q4CXR4	Q4CXR4_TRYCC	Trypanosoma cruzi strain CL Brener	Ribosomal protein S29, putative
Q4D6H7	Q4D6H7_TRYCC	Trypanosoma cruzi strain CL Brener	Ribosomal protein S20, putative