PDB 5d8d
PDB Information
| PDB | 5D8D |
| Method | X-RAY DIFFRACTION |
| Host Organism | Escherichia coli |
| Gene Source | Acinetobacter baumannii ACICU |
| Primary Citation | The crystal structure of the D-alanine-D-alanine ligase from Acinetobacter baumannii suggests a flexible conformational change in the central domain before nucleotide binding
J. Microbiol.
|
| Header | Ligase |
| Released | 2015-08-17 |
| Resolution | 2.190 |
| CATH Insert Date | 04 Sep, 2016 |
PDB Images (25)
5d8d
PDB 5d8d
5d8dA
PDB Chain 5d8dA
5d8dB
PDB Chain 5d8dB
5d8dC
PDB Chain 5d8dC
5d8dD
PDB Chain 5d8dD
5d8dE
PDB Chain 5d8dE
5d8dF
PDB Chain 5d8dF
5d8dA01
CATH Domain 5d8dA01
5d8dA02
CATH Domain 5d8dA02
5d8dA03
CATH Domain 5d8dA03
5d8dB01
CATH Domain 5d8dB01
5d8dB02
CATH Domain 5d8dB02
5d8dB03
CATH Domain 5d8dB03
5d8dC01
CATH Domain 5d8dC01
5d8dC02
CATH Domain 5d8dC02
5d8dC03
CATH Domain 5d8dC03
5d8dD01
CATH Domain 5d8dD01
5d8dD02
CATH Domain 5d8dD02
5d8dD03
CATH Domain 5d8dD03
5d8dE01
CATH Domain 5d8dE01
5d8dE02
CATH Domain 5d8dE02
5d8dE03
CATH Domain 5d8dE03
5d8dF01
CATH Domain 5d8dF01
5d8dF02
CATH Domain 5d8dF02
5d8dF03
CATH Domain 5d8dF03
PDB Prints
PDB Chains (6)
| Chain ID | Date inserted into CATH | CATH Status |
|---|---|---|
| A | 05 Sep, 2016 | Chopped |
| B | 05 Sep, 2016 | Chopped |
| C | 05 Sep, 2016 | Chopped |
| D | 05 Sep, 2016 | Chopped |
| E | 05 Sep, 2016 | Chopped |
| F | 05 Sep, 2016 | Chopped |
CATH Domains (18)
| Domain ID | Date inserted into CATH | Superfamily | CATH Status |
|---|---|---|---|
| 5d8dA01 | 09 Sep, 2016 | 3.40.50.20 | Assigned |
| 5d8dA02 | 09 Sep, 2016 | 3.30.470.20 | Assigned |
| 5d8dA03 | 09 Sep, 2016 | 3.30.1490.20 | Assigned |
| 5d8dB01 | 09 Sep, 2016 | 3.40.50.20 | Assigned |
| 5d8dB02 | 09 Sep, 2016 | 3.30.470.20 | Assigned |
| 5d8dB03 | 09 Sep, 2016 | 3.30.1490.20 | Assigned |
| 5d8dC01 | 09 Sep, 2016 | 3.40.50.20 | Assigned |
| 5d8dC02 | 09 Sep, 2016 | 3.30.470.20 | Assigned |
| 5d8dC03 | 09 Sep, 2016 | 3.30.1490.20 | Assigned |
| 5d8dD01 | 09 Sep, 2016 | 3.40.50.20 | Assigned |
| 5d8dD02 | 09 Sep, 2016 | 3.30.470.20 | Assigned |
| 5d8dD03 | 09 Sep, 2016 | 3.30.1490.20 | Assigned |
| 5d8dE01 | 08 Sep, 2016 | 3.40.50.20 | Assigned |
| 5d8dE02 | 08 Sep, 2016 | 3.30.470.20 | Assigned |
| 5d8dE03 | 08 Sep, 2016 | 3.30.1490.20 | Assigned |
| 5d8dF01 | 09 Sep, 2016 | 3.40.50.20 | Assigned |
| 5d8dF02 | 09 Sep, 2016 | 3.30.470.20 | Assigned |
| 5d8dF03 | 09 Sep, 2016 | 3.30.1490.20 | Assigned |
UniProtKB Entries (6)
| Accession | Gene ID | Taxon | Description |
|---|---|---|---|
| B2I1J3 | DDL_ACIBC | Acinetobacter baumannii ACICU | D-alanine--D-alanine ligase |
| B2I1J3 | DDL_ACIBC | Acinetobacter baumannii ACICU | D-alanine--D-alanine ligase |
| B2I1J3 | DDL_ACIBC | Acinetobacter baumannii ACICU | D-alanine--D-alanine ligase |
| B2I1J3 | DDL_ACIBC | Acinetobacter baumannii ACICU | D-alanine--D-alanine ligase |
| B2I1J3 | DDL_ACIBC | Acinetobacter baumannii ACICU | D-alanine--D-alanine ligase |
| B2I1J3 | DDL_ACIBC | Acinetobacter baumannii ACICU | D-alanine--D-alanine ligase |