PDB 3oto

PDB Information

PDB3OTO
MethodX-RAY DIFFRACTION
Host Organism
Gene Source
Primary Citation
Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function.
Demirci, H., Murphy, F., Belardinelli, R., Kelley, A.C., Ramakrishnan, V., Gregory, S.T., Dahlberg, A.E., Jogl, G.
Rna
HeaderRibosome
Released2010-09-13
Resolution3.690
CATH Insert Date03 Oct, 2010

PDB Images (47)

PDB Prints

PDB Chains (21)

Chain ID Date inserted into CATH CATH Status
A 04 Oct, 2010 Rejected
B 04 Oct, 2010 Chopped
C 04 Oct, 2010 Chopped
D 04 Oct, 2010 Chopped
E 04 Oct, 2010 Chopped
F 04 Oct, 2010 Chopped
G 04 Oct, 2010 Chopped
H 04 Oct, 2010 Chopped
I 04 Oct, 2010 Chopped
J 04 Oct, 2010 Chopped
K 04 Oct, 2010 Chopped
L 04 Oct, 2010 Chopped
M 04 Oct, 2010 Chopped
N 04 Oct, 2010 Chopped
O 04 Oct, 2010 Chopped
P 04 Oct, 2010 Chopped
Q 04 Oct, 2010 Chopped
R 04 Oct, 2010 Chopped
S 04 Oct, 2010 Chopped
T 04 Oct, 2010 Chopped
U 04 Oct, 2010 Rejected

CATH Domains (25)

Domain ID Date inserted into CATH Superfamily CATH Status
3otoB01 17 Feb, 2011 3.40.50.10490 Assigned
3otoB02 17 Feb, 2011 1.10.287.610 Assigned
3otoC01 17 Feb, 2011 3.30.300.20 Assigned
3otoC02 17 Feb, 2011 3.30.1140.32 Assigned
3otoD01 17 Feb, 2011 1.10.1050.10 Assigned
3otoD02 17 Feb, 2011 3.10.290.10 Assigned
3otoE01 17 Feb, 2011 3.30.160.20 Assigned
3otoE02 17 Feb, 2011 3.30.230.10 Assigned
3otoF00 16 Feb, 2011 3.30.70.60 Assigned
3otoG00 17 Feb, 2011 1.10.455.10 Assigned
3otoH01 17 Feb, 2011 3.30.1370.30 Assigned
3otoH02 17 Feb, 2011 3.30.1490.10 Assigned
3otoI00 17 Feb, 2011 3.30.230.10 Assigned
3otoJ00 18 Mar, 2011 3.30.70.600 Assigned
3otoK00 17 Feb, 2011 3.30.420.80 Assigned
3otoL00 17 Feb, 2011 2.40.50.140 Assigned
3otoM01 17 Feb, 2011 1.10.8.50 Assigned
3otoM02 17 Feb, 2011 4.10.910.10 Assigned
3otoN00 16 Feb, 2011 4.10.830.10 Assigned
3otoO00 17 Feb, 2011 1.10.287.10 Assigned
3otoP00 08 Feb, 2013 3.30.1320.10 Assigned
3otoQ00 08 Feb, 2013 2.40.50.140 Assigned
3otoR00 16 Feb, 2011 4.10.640.10 Assigned
3otoS00 17 Feb, 2011 3.30.860.10 Assigned
3otoT00 16 Feb, 2011 1.20.58.110 Assigned

UniProtKB Entries (19)

Accession Gene ID Taxon Description
Q5SHN3 RS12_THET8 Thermus thermophilus HB8 30S ribosomal protein S12
P80374 RS9_THET8 Thermus thermophilus HB8 30S ribosomal protein S9
P80377 RS13_THET8 Thermus thermophilus HB8 30S ribosomal protein S13
A0A0N0BLP2 RS14Z_THEAQ Thermus aquaticus 30S ribosomal protein S14 type Z
P0DOY9 RS8_THET8 Thermus thermophilus HB8 30S ribosomal protein S8
Q5SHN7 RS10_THET8 Thermus thermophilus HB8 30S ribosomal protein S10
Q5SLQ0 RS18_THET8 Thermus thermophilus HB8 30S ribosomal protein S18
P80373 RS4_THET8 Thermus thermophilus HB8 30S ribosomal protein S4
P17291 RS7_THET8 Thermus thermophilus HB8 30S ribosomal protein S7
Q5SJ76 RS15_THET8 Thermus thermophilus HB8 30S ribosomal protein S15
P80376 RS11_THET8 Thermus thermophilus HB8 30S ribosomal protein S11
A0A0N0BLS5 RS17_THEAQ Thermus aquaticus 30S ribosomal protein S17
Q5SHQ5 RS5_THET8 Thermus thermophilus HB8 30S ribosomal protein S5
Q5SHP2 RS19_THET8 Thermus thermophilus HB8 30S ribosomal protein S19
P80372 RS3_THET8 Thermus thermophilus HB8 30S ribosomal protein S3
Q5SJH3 RS16_THET8 Thermus thermophilus HB8 30S ribosomal protein S16
P80371 RS2_THET8 Thermus thermophilus HB8 30S ribosomal protein S2
Q5SLP8 RS6_THET8 Thermus thermophilus HB8 30S ribosomal protein S6
P80380 RS20_THET8 Thermus thermophilus HB8 30S ribosomal protein S20