The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Vacuolar R-SNARE Nyv1, longin domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.

Superfamily: Vacuolar R-SNARE Nyv1, longin domain

SNARE-mediated fusion typically results in the formation a complex consisting of three Q-SNAREs and one R-SNARE. R-SNAREs that contain a profilin-like fold in their N-terminal domains have been termed longins. The genome of the yeast Saccharomyces cerevisiae encodes five R-SNAREs of which three (Sec22p, Ytk6p, and Nyv1p) are longins. It is important to note that the given longin domain (LD) is not restricted to R-SNAREs and has been identified in a variety of proteins.

Structural domains comprising this superfamily share the structure of the N-terminal longin domain of the Vacuolar R-SNARE Nyv1 protein. Studies on this domain have shown that it contains a YXXomega-like sorting motif (Y31GTI34), responsible for the AP3-dependent vacuolar localization of Nyv1p PMID:16855025.

GO Diversity

Unique GO annotations
7 Unique GO terms

EC Diversity

Unique EC annotations
0 Unique EC terms

Species Diversity

Unique species annotations
42 Unique species

Sequence/Structure Diversity

Overview of the sequence / structure diversity of this superfamily compared to other superfamilies in CATH. Click on the chart to view the data in more detail.

Superfamily Summary

A general summary of information for this superfamily.
Structures
Domains: 1
Domain clusters (>95% seq id): 1
Domain clusters (>35% seq id): 1
Unique PDBs: 1
Alignments
Structural Clusters (5A): 1
Structural Clusters (9A): 1
FunFam Clusters: 2
Function
Unique EC:
Unique GO: 7
Taxonomy
Unique Species: 42