CATH

http://wiki.cathdb.info/ 2026-03-03T05:48:03+00:00 CATH http://wiki.cathdb.info/ http://wiki.cathdb.info/lib/exe/fetch.php?media=wiki:dokuwiki.svg text/html 2014-11-07T14:56:54+00:00 Anonymous (anonymous@undisclosed.example.com) cathdomaindescriptionfile http://wiki.cathdb.info/doku.php?id=data:cathdomaindescriptionfile&rev=1415372214&do=diff Cath Domain Description File (CDDF) Format 1.0 Each entry corresponds to a CATH domain for a given release of the CATH database. Note: Different releases of CATH may have different domain definitions. See below for CATH domain and segment naming conventions. text/html 2008-09-08T16:50:08+00:00 Anonymous (anonymous@undisclosed.example.com) cathdomainlist http://wiki.cathdb.info/doku.php?id=data:cathdomainlist&rev=1220892608&do=diff CATH List File (CLF) Format 2.0 This file format has an entry for each structural entry in CATH. Column Description 1 CATH domain name (seven characters) 2 Class number 3 Architecture number 4 Topology number 5 Homologous superfamily number text/html 2008-09-08T16:29:39+00:00 Anonymous (anonymous@undisclosed.example.com) cathdomainpdb http://wiki.cathdb.info/doku.php?id=data:cathdomainpdb&rev=1220891379&do=diff Cath Domain PDB File: (DomPDB) Cath Domain PDB (or DomPDB) files are text files that contain just the PDB ATOM records that correspond to the residues of a particular CATH domain. These are useful as they can provide the input for protein structure viewers to examine individual CATH domains, or by structure comparison algorithms to compare domains. text/html 2015-09-30T16:31:22+00:00 Anonymous (anonymous@undisclosed.example.com) cathdomall http://wiki.cathdb.info/doku.php?id=data:cathdomall&rev=1443630682&do=diff Cath Domall File (CDF) Version 2.0 The CATH Domall file describes domain boundaries for entries in the CATH database. All PDB chains in CATH that contain 1 or more domains have a CathDomall entry. Whole chain domains can be identified where the number of domains is 1 and the number of fragments is 0. text/html 2008-09-08T16:52:35+00:00 Anonymous (anonymous@undisclosed.example.com) cathnames http://wiki.cathdb.info/doku.php?id=data:cathnames&rev=1220892755&do=diff CATH Names File (CNF) Format 2.0 Description of each node in the CATH hierarchy for class, architecture, topology and homologous superfamily levels. Column Description 1 Node number 2 Representative protein domain (CATH seven character domain name) text/html 2017-10-14T15:28:41+00:00 Anonymous (anonymous@undisclosed.example.com) index http://wiki.cathdb.info/doku.php?id=data:index&rev=1507994921&do=diff CATH Data Downloads This page provides information on the data files that are available to download from the CATH FTP site. See CATH Releases for more information on CATH and CATH-Plus. CATH (daily snapshot) <ftp://orengoftp.biochem.ucl.ac.uk/cath/releases/daily-release/newest/> File name Description cath-b-newest-all.gz List the latest domain boundaries and superfamily (C.A.T.H) annotations for all CATH domains

CATH Documentation