The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: 60S ribosomal protein L35

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 12 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
26 A0A1D8PK30 (/NAS) A0A1D8PK30 (/NAS) A0A1D8PK30 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS)
(16 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
25 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(15 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
23 P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA)
(13 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
23 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(13 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
12 P0CX84 (/IC) P0CX84 (/IC) P0CX84 (/IC) P0CX84 (/IC) P0CX84 (/IC) P0CX84 (/IC) P0CX85 (/IC) P0CX85 (/IC) P0CX85 (/IC) P0CX85 (/IC)
(2 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
5 O80626 (/IDA) O80626 (/IDA) Q9M3D2 (/IDA) Q9SF53 (/IDA) Q9SF53 (/IDA)
Ribonucleoprotein complex binding GO:0043021
Interacting selectively and non-covalently with any complex of RNA and protein.
4 P17078 (/IDA) P17078 (/IDA) P17078 (/IDA) P17078 (/IDA)
Ribonucleoprotein complex binding GO:0043021
Interacting selectively and non-covalently with any complex of RNA and protein.
4 Q6ZWV7 (/ISO) Q6ZWV7 (/ISO) Q6ZWV7 (/ISO) Q6ZWV7 (/ISO)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
2 Q9SF53 (/IDA) Q9SF53 (/IDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
2 Q8MT59 (/HDA) Q9W499 (/HDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
1 O74904 (/ISO)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
1 Q54J23 (/ISS)

There are 15 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
23 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(13 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
23 P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS) P42766 (/NAS)
(13 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
23 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(13 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
23 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(13 more)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
23 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(13 more)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
23 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(13 more)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
14 P0CX84 (/IC) P0CX84 (/IC) P0CX84 (/IC) P0CX84 (/IC) P0CX84 (/IC) P0CX84 (/IC) P0CX85 (/IC) P0CX85 (/IC) P0CX85 (/IC) P0CX85 (/IC)
(4 more)
Maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000463
Any process involved in the maturation of a precursor Large SubUnit (LSU) ribosomal RNA (rRNA) molecule into a mature LSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and Large Subunit (LSU) in that order from 5' to 3' along the primary transcript.
12 P0CX84 (/IMP) P0CX84 (/IMP) P0CX84 (/IMP) P0CX84 (/IMP) P0CX84 (/IMP) P0CX84 (/IMP) P0CX85 (/IMP) P0CX85 (/IMP) P0CX85 (/IMP) P0CX85 (/IMP)
(2 more)
Cellular response to UV-B GO:0071493
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 280 to 315 nm.
4 P17078 (/IEP) P17078 (/IEP) P17078 (/IEP) P17078 (/IEP)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
2 Q8MT59 (/TAS) Q9W499 (/TAS)
Erythrocyte differentiation GO:0030218
The process in which a myeloid precursor cell acquires specializes features of an erythrocyte.
2 Q8JHJ1 (/IMP) Q8JHJ1 (/IMP)
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
2 Q8JHJ1 (/IMP) Q8JHJ1 (/IMP)
Regulation of cell cycle GO:0051726
Any process that modulates the rate or extent of progression through the cell cycle.
2 Q8JHJ1 (/IMP) Q8JHJ1 (/IMP)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
1 O74904 (/ISO)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
1 Q54J23 (/ISS)

There are 21 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
25 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(15 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
23 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(13 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
23 P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS) P42766 (/TAS)
(13 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
23 P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA)
(13 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
23 P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA) P42766 (/HDA)
(13 more)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
22 F4KDR2 (/IDA) O80626 (/IDA) O80626 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX85 (/IDA)
(12 more)
Preribosome, large subunit precursor GO:0030687
A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.
12 P0CX84 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX84 (/IDA) P0CX85 (/IDA) P0CX85 (/IDA) P0CX85 (/IDA) P0CX85 (/IDA)
(2 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
6 Q38FW8 (/IDA) Q38FW8 (/IDA) Q38FW8 (/IDA) Q38FW8 (/IDA) Q9SF53 (/IDA) Q9SF53 (/IDA)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
5 O74904 (/ISO) Q6ZWV7 (/ISO) Q6ZWV7 (/ISO) Q6ZWV7 (/ISO) Q6ZWV7 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
4 Q38FW8 (/IDA) Q38FW8 (/IDA) Q38FW8 (/IDA) Q38FW8 (/IDA)
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
3 F4KDR2 (/IDA) Q9SF53 (/IDA) Q9SF53 (/IDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
3 F4KDR2 (/IDA) O80626 (/IDA) O80626 (/IDA)
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
2 Q8MT59 (/HDA) Q9W499 (/HDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 O74904 (/HDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 Q4Q8V7 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q4Q8V7 (/ISO)
Vacuolar membrane GO:0005774
The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
1 F4KDR2 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 O74904 (/HDA)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
1 F4KDR2 (/IDA)
Large ribosomal subunit GO:0015934
The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
1 Q29361 (/IDA)
Cytoplasmic side of rough endoplasmic reticulum membrane GO:0098556
The side (leaflet) of the rough endoplasmic reticulum membrane that faces the cytoplasm.
1 Q29361 (/IDA)
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