The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"YjeF N-terminal domain
".
FunFam 10: Edc3p
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
6 | P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
6 | P39998 (/IPI) P39998 (/IPI) P39998 (/IPI) P39998 (/IPI) P39998 (/IPI) P39998 (/IPI) |
There are 4 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Deadenylation-independent decapping of nuclear-transcribed mRNA GO:0031087
Cleavage of the 5'-cap of a nuclear-transcribed mRNA that is independent of poly(A) tail shortening.
|
6 | P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) |
|
Cytoplasmic mRNA processing body assembly GO:0033962
The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.
|
6 | P39998 (/IGI) P39998 (/IGI) P39998 (/IGI) P39998 (/IGI) P39998 (/IGI) P39998 (/IGI) |
|
Cytoplasmic mRNA processing body assembly GO:0033962
The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.
|
6 | P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) |
|
Positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay GO:1900153
Any process that activates or increases the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay.
|
6 | P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) P39998 (/IMP) |
There are 4 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
P-body GO:0000932
A focus in the cytoplasm where mRNAs may become inactivated by decapping or some other mechanism. Protein and RNA localized to these foci are involved in mRNA degradation, nonsense-mediated mRNA decay (NMD), translational repression, and RNA-mediated gene silencing.
|
6 | P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
6 | P39998 (/HDA) P39998 (/HDA) P39998 (/HDA) P39998 (/HDA) P39998 (/HDA) P39998 (/HDA) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
6 | P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) P39998 (/IDA) |
