The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 81: Cleavage and polyadenylation specificity factor su...

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 11 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
24 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(14 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
23 Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA)
(13 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
23 Q16630 (/IPI) Q16630 (/IPI) Q16630 (/IPI) Q16630 (/IPI) Q16630 (/IPI) Q16630 (/IPI) Q16630 (/IPI) Q16630 (/IPI) Q16630 (/IPI) Q16630 (/IPI)
(13 more)
Ribosomal large subunit binding GO:0043023
Interacting selectively and non-covalently with any part of the larger ribosomal subunit.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Exon-exon junction complex binding GO:1990448
Interacting selectively and non-covalently with an exon-exon junction complex, a protein complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
7 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS) Q9VSH4 (/ISS)
Ribosomal large subunit binding GO:0043023
Interacting selectively and non-covalently with any part of the larger ribosomal subunit.
3 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q6NVF9 (/ISS)
Exon-exon junction complex binding GO:1990448
Interacting selectively and non-covalently with an exon-exon junction complex, a protein complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
3 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q6NVF9 (/ISS)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
1 Q6NVF9 (/ISO)
Ribosomal large subunit binding GO:0043023
Interacting selectively and non-covalently with any part of the larger ribosomal subunit.
1 Q6NVF9 (/ISO)
Exon-exon junction complex binding GO:1990448
Interacting selectively and non-covalently with an exon-exon junction complex, a protein complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
1 Q6NVF9 (/ISO)

There are 21 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Positive regulation of RNA export from nucleus GO:0046833
Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm.
23 Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP)
(13 more)
Protein tetramerization GO:0051262
The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Protein heterotetramerization GO:0051290
The formation of a protein heterotetramer, a macromolecular structure consisting of four noncovalently associated subunits, of which not all are identical.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Pre-mRNA cleavage required for polyadenylation GO:0098789
The targeted, endonucleolytic cleavage of a pre-mRNA, required for polyadenylation of the 3' end. This cleavage is directed by binding sites near the 3' end of the mRNA and leaves a 3' hydoxyl end which then becomes a target for adenylation.
23 Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP)
(13 more)
MRNA alternative polyadenylation GO:0110104
The process of generating multiple mRNA molecules with variable 3'-end length formation from a given pre-mRNA by differential use of cleavage and polyadenylation signals (pA signals).
23 Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP) Q16630 (/IMP)
(13 more)
Messenger ribonucleoprotein complex assembly GO:1990120
The aggregation, arrangement and bonding together of proteins and messenger RNA (mRNA) molecules to form a messenger ribonucleoprotein (mRNP) complex.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Positive regulation of RNA export from nucleus GO:0046833
Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Protein heterotetramerization GO:0051290
The formation of a protein heterotetramer, a macromolecular structure consisting of four noncovalently associated subunits, of which not all are identical.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
MRNA alternative polyadenylation GO:0110104
The process of generating multiple mRNA molecules with variable 3'-end length formation from a given pre-mRNA by differential use of cleavage and polyadenylation signals (pA signals).
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Messenger ribonucleoprotein complex assembly GO:1990120
The aggregation, arrangement and bonding together of proteins and messenger RNA (mRNA) molecules to form a messenger ribonucleoprotein (mRNP) complex.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
1 Q9VSH4 (/HMP)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
1 Q6NVF9 (/ISO)
Positive regulation of autophagy GO:0010508
Any process that activates, maintains or increases the rate of autophagy. Autophagy is the process in which cells digest parts of their own cytoplasm.
1 Q9VSH4 (/IGI)
Regulation of RNA splicing GO:0043484
Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
1 Q9VSH4 (/IMP)
Positive regulation of RNA export from nucleus GO:0046833
Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm.
1 Q6NVF9 (/ISO)
Protein tetramerization GO:0051262
The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
1 Q6NVF9 (/ISO)
Protein heterotetramerization GO:0051290
The formation of a protein heterotetramer, a macromolecular structure consisting of four noncovalently associated subunits, of which not all are identical.
1 Q6NVF9 (/ISO)
Pre-mRNA cleavage required for polyadenylation GO:0098789
The targeted, endonucleolytic cleavage of a pre-mRNA, required for polyadenylation of the 3' end. This cleavage is directed by binding sites near the 3' end of the mRNA and leaves a 3' hydoxyl end which then becomes a target for adenylation.
1 Q6NVF9 (/ISO)
MRNA alternative polyadenylation GO:0110104
The process of generating multiple mRNA molecules with variable 3'-end length formation from a given pre-mRNA by differential use of cleavage and polyadenylation signals (pA signals).
1 Q6NVF9 (/ISO)
Messenger ribonucleoprotein complex assembly GO:1990120
The aggregation, arrangement and bonding together of proteins and messenger RNA (mRNA) molecules to form a messenger ribonucleoprotein (mRNP) complex.
1 Q6NVF9 (/ISO)

There are 31 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
26 F8WJN3 (/IDA) F8WJN3 (/IDA) F8WJN3 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(16 more)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
26 F8WJN3 (/IDA) F8WJN3 (/IDA) F8WJN3 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(16 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
25 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(15 more)
Perichromatin fibrils GO:0005726
Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
MRNA cleavage and polyadenylation specificity factor complex GO:0005847
A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
MRNA cleavage factor complex GO:0005849
Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
23 Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA) Q16630 (/HDA)
(13 more)
Interchromatin granule GO:0035061
A class of nuclear body measuring 20-25 nm in diameter and distributed throughout the interchromatin space, linked together by thin fibrils. They are believed to be storage centers for various snRNAs, snRNPs, serine/arginine-rich proteins and RNA polymerase II. A typical mammalian cell contains 25-50 clusters of interchromatin granules. Interchromatin granule clusters do not contain the heterogeneous nuclear RNA-binding proteins (hnRNPs).
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Paraspeckles GO:0042382
Discrete subnuclear bodies in the interchromatin nucleoplasmic space, often located adjacent to nuclear specks. 10-20 paraspeckles are typically found in human cell nuclei.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
23 Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA) Q16630 (/IDA)
(13 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Perichromatin fibrils GO:0005726
Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
MRNA cleavage factor complex GO:0005849
Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Interchromatin granule GO:0035061
A class of nuclear body measuring 20-25 nm in diameter and distributed throughout the interchromatin space, linked together by thin fibrils. They are believed to be storage centers for various snRNAs, snRNPs, serine/arginine-rich proteins and RNA polymerase II. A typical mammalian cell contains 25-50 clusters of interchromatin granules. Interchromatin granule clusters do not contain the heterogeneous nuclear RNA-binding proteins (hnRNPs).
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Paraspeckles GO:0042382
Discrete subnuclear bodies in the interchromatin nucleoplasmic space, often located adjacent to nuclear specks. 10-20 paraspeckles are typically found in human cell nuclei.
6 Q0P5D2 (/ISS) Q5NVH8 (/ISS) Q5ZL34 (/ISS) Q6DDW4 (/ISS) Q6NVF9 (/ISS) Q6NWC6 (/ISS)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9VSH4 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q9VSH4 (/IC)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q6NVF9 (/ISO)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
1 Q6NVF9 (/ISO)
Perichromatin fibrils GO:0005726
Structures of variable diameter visible in the nucleoplasm by electron microscopy, mainly observed near the border of condensed chromatin. The fibrils are enriched in RNA, and are believed to be sites of pre-mRNA splicing and polyadenylylation representing the in situ form of nascent transcripts.
1 Q6NVF9 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
1 Q6NVF9 (/ISO)
MRNA cleavage and polyadenylation specificity factor complex GO:0005847
A multisubunit complex that binds to the canonical AAUAAA hexamer and to U-rich upstream sequence elements on the pre-mRNA, thereby stimulating the otherwise weakly active and nonspecific polymerase to elongate efficiently RNAs containing a poly(A) signal.
1 Q6NVF9 (/ISO)
MRNA cleavage factor complex GO:0005849
Any macromolecular complex involved in cleavage or polyadenylation of mRNA molecules.
1 Q6NVF9 (/ISO)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
1 Q6NVF9 (/ISO)
Interchromatin granule GO:0035061
A class of nuclear body measuring 20-25 nm in diameter and distributed throughout the interchromatin space, linked together by thin fibrils. They are believed to be storage centers for various snRNAs, snRNPs, serine/arginine-rich proteins and RNA polymerase II. A typical mammalian cell contains 25-50 clusters of interchromatin granules. Interchromatin granule clusters do not contain the heterogeneous nuclear RNA-binding proteins (hnRNPs).
1 Q6NVF9 (/ISO)
Paraspeckles GO:0042382
Discrete subnuclear bodies in the interchromatin nucleoplasmic space, often located adjacent to nuclear specks. 10-20 paraspeckles are typically found in human cell nuclei.
1 Q6NVF9 (/ISO)
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
1 Q6NVF9 (/ISO)
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