CATH Superfamily 3.30.40.210
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 4: Transcription elongation factor SPT4
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
13 |
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
(3 more) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
13 |
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
(3 more) |
There are 2 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
13 |
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
Q8IJA5 (/ISS)
(3 more) |
|
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
1 | Q54NF2 (/ISS) |
There are 1 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q54NF2 (/ISS) |
