The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Trafficking protein particle complex subunit 3
".
FunFam 15: TRapp subunit
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 1 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
9 | Q99394 (/IPI) Q99394 (/IPI) Q99394 (/IPI) Q99394 (/IPI) Q99394 (/IPI) Q99394 (/IPI) Q99394 (/IPI) Q99394 (/IPI) Q99394 (/IPI) |
There are 6 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006888
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
|
9 | Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) |
Positive regulation of macroautophagy GO:0016239
Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation.
|
9 | Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) |
Positive regulation of macroautophagy GO:0016239
Any process, such as recognition of nutrient depletion, that activates or increases the rate of macroautophagy to bring cytosolic macromolecules to the vacuole/lysosome for degradation.
|
9 | Q99394 (/IMP) Q99394 (/IMP) Q99394 (/IMP) Q99394 (/IMP) Q99394 (/IMP) Q99394 (/IMP) Q99394 (/IMP) Q99394 (/IMP) Q99394 (/IMP) |
Protein localization to phagophore assembly site GO:0034497
Any process in which a protein is transported to, or maintained at, the phagophore assembly site (PAS).
|
9 | Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) |
Cellular protein-containing complex assembly GO:0034622
The aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell.
|
9 | Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) |
Cellular protein-containing complex localization GO:0034629
A protein complex localization process that takes place at the cellular level; as a result, a protein complex is transported to, or maintained in, a specific location within a cell.
|
9 | Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) Q99394 (/IGI) |
There are 7 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Phagophore assembly site GO:0000407
Punctate structures proximal to the endoplasmic reticulum which are the sites where the Atg machinery assembles upon autophagy induction.
|
9 | Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) |
Cis-Golgi network GO:0005801
The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.
|
9 | Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) |
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
|
9 | Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
9 | Q99394 (/HDA) Q99394 (/HDA) Q99394 (/HDA) Q99394 (/HDA) Q99394 (/HDA) Q99394 (/HDA) Q99394 (/HDA) Q99394 (/HDA) Q99394 (/HDA) |
TRAPPI protein complex GO:1990070
A complex that tethers COPII vesicles at ER-Golgi intermediate compartment. Its role in this part of the vesicular transport may start at the ER exit sites. Binds to a component of the COPII coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Trs20, Trs23, Trs31, Trs33 which are regarded as the \core subunits\ of all TRAPP complexes in yeast.
|
9 | Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) |
TRAPPII protein complex GO:1990071
A complex that mediates intra-Golgi traffic, Golgi exit, endosome-to-Golgi traffic, and the trafficking of autophagy proteins from Golgi to the phagophore assembly site. Binds to a component of the COPI coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Tca17, Trs20, Trs23, Trs31, Trs33, Trs65, Trs120, Trs130. The whole complex is thought to dimerize with itself.
|
9 | Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) |
TRAPPIII protein complex GO:1990072
A complex that functions in anterograde transport at the Golgi and also regulates autophagy. In yeast it includes at least the following subunits: Bet3 (as homodimer), Bet5, Trs20, Trs23, Trs31, Trs33, Trs85. TRAPPIII may include further, as yet undescribed, proteins.
|
9 | Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) Q99394 (/IDA) |