The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Ribosomal protein S3, C-terminal domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 5: 40S ribosomal protein S3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 54 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
98 P05750 (/IPI) P05750 (/IPI) P05750 (/IPI) P05750 (/IPI) P05750 (/IPI) P05750 (/IPI) P05750 (/IPI) P05750 (/IPI) P05750 (/IPI) P05750 (/IPI)
(88 more)
DNA-(apurinic or apyrimidinic site) endonuclease activity GO:0003906
Catalysis of the cleavage of the C-O-P bond in the AP site created when DNA glycosylase removes a damaged base, involved in the DNA base excision repair pathway (BER).
69 P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA)
(59 more)
Kinase binding GO:0019900
Interacting selectively and non-covalently with a kinase, any enzyme that catalyzes the transfer of a phosphate group.
59 P23396 (/IPI) P23396 (/IPI) P23396 (/IPI) P23396 (/IPI) P23396 (/IPI) P23396 (/IPI) P23396 (/IPI) P23396 (/IPI) P23396 (/IPI) P23396 (/IPI)
(49 more)
Damaged DNA binding GO:0003684
Interacting selectively and non-covalently with damaged DNA.
32 P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(22 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
32 P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA)
(22 more)
Oxidized purine DNA binding GO:0032357
Interacting selectively and non-covalently with oxidized purine residues in DNA.
32 P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(22 more)
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
30 P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(20 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
30 P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA) P23396 (/HDA)
(20 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
30 P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(20 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
30 P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(20 more)
Showing 1 to 10 of 54 entries

There are 79 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
59 P23396 (/IC) P23396 (/IC) P23396 (/IC) P23396 (/IC) P23396 (/IC) P23396 (/IC) P23396 (/IC) P23396 (/IC) P23396 (/IC) P23396 (/IC)
(49 more)
Positive regulation of protein complex assembly GO:0031334
Any process that activates or increases the frequency, rate or extent of protein complex assembly.
59 P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP)
(49 more)
Regulation of apoptotic process GO:0042981
Any process that modulates the occurrence or rate of cell death by apoptotic process.
59 P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP)
(49 more)
Positive regulation of NF-kappaB transcription factor activity GO:0051092
Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
59 P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP)
(49 more)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
30 P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS)
(20 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
30 P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS)
(20 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
30 P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS) P23396 (/NAS)
(20 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
30 P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS)
(20 more)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
30 P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS)
(20 more)
Cellular response to DNA damage stimulus GO:0006974
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
30 P23396 (/IEP) P23396 (/IEP) P23396 (/IEP) P23396 (/IEP) P23396 (/IEP) P23396 (/IEP) P23396 (/IEP) P23396 (/IEP) P23396 (/IEP) P23396 (/IEP)
(20 more)
Showing 1 to 10 of 79 entries

There are 55 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Ribonucleoprotein complex GO:1990904
A macromolecular complex containing both protein and RNA molecules.
120 P62908 (/ISS) P62908 (/ISS) P62908 (/ISS) P62908 (/ISS) P62908 (/ISS) P62908 (/ISS) P62908 (/ISS) P62908 (/ISS) P62908 (/ISS) P62908 (/ISS)
(110 more)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
116 P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA) P05750 (/IDA)
(106 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
61 P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(51 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
59 P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(49 more)
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
33 E9PL09 (/IDA) E9PL09 (/IDA) E9PL09 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(23 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
33 E9PL09 (/IDA) E9PL09 (/IDA) E9PL09 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(23 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
30 P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP)
(20 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
30 P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS) P23396 (/TAS)
(20 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
30 P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA) P23396 (/IDA)
(20 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
30 P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP) P23396 (/IMP)
(20 more)
Showing 1 to 10 of 55 entries
CATH-Gene3D is a Global Biodata Core Resource Learn more...