The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"Transcription factor COE1, DNA-binding domain
".
FunFam 1: transcription factor COE1 isoform X2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 13 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
45 |
O08791 (/IPI)
O08791 (/IPI)
O08791 (/IPI)
O08791 (/IPI)
O08791 (/IPI)
O08791 (/IPI)
O08791 (/IPI)
Q07802 (/IPI)
Q07802 (/IPI)
Q07802 (/IPI)
(35 more) |
|
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
28 |
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
(18 more) |
|
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
26 |
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
(16 more) |
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
22 |
Q9BQW3 (/ISA)
Q9H4W6 (/ISA)
Q9H4W6 (/ISA)
Q9UH73 (/ISA)
Q9UH73 (/ISA)
Q9UH73 (/ISA)
Q9UH73 (/ISA)
Q9UH73 (/ISA)
Q9UH73 (/ISA)
Q9UH73 (/ISA)
(12 more) |
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
22 |
Q9BQW3 (/ISM)
Q9H4W6 (/ISM)
Q9H4W6 (/ISM)
Q9UH73 (/ISM)
Q9UH73 (/ISM)
Q9UH73 (/ISM)
Q9UH73 (/ISM)
Q9UH73 (/ISM)
Q9UH73 (/ISM)
Q9UH73 (/ISM)
(12 more) |
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
21 |
Q9H4W6 (/NAS)
Q9H4W6 (/NAS)
Q9UH73 (/NAS)
Q9UH73 (/NAS)
Q9UH73 (/NAS)
Q9UH73 (/NAS)
Q9UH73 (/NAS)
Q9UH73 (/NAS)
Q9UH73 (/NAS)
Q9UH73 (/NAS)
(11 more) |
|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
21 |
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
(11 more) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
19 |
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
(9 more) |
|
C2H2 zinc finger domain binding GO:0070742
Interacting selectively and non-covalently with a C2H2-type zinc finger domain of a protein. The C2H2 zinc finger is the classical zinc finger domain, in which two conserved cysteines and histidines co-ordinate a zinc ion.
|
19 |
Q07802 (/ISO)
Q07802 (/ISO)
Q07802 (/ISO)
Q07802 (/ISO)
Q07802 (/ISO)
Q07802 (/ISO)
Q07802 (/ISO)
Q07802 (/ISO)
Q07802 (/ISO)
Q07802 (/ISO)
(9 more) |
|
C2H2 zinc finger domain binding GO:0070742
Interacting selectively and non-covalently with a C2H2-type zinc finger domain of a protein. The C2H2 zinc finger is the classical zinc finger domain, in which two conserved cysteines and histidines co-ordinate a zinc ion.
|
3 | Q63398 (/IPI) Q63398 (/IPI) Q63398 (/IPI) |
|
RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
|
2 | Q8K4J2 (/IMP) Q8K4J2 (/IMP) |
|
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
2 | Q8K4J2 (/IMP) Q8K4J2 (/IMP) |
|
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
|
2 | Q8K4J2 (/IPI) Q8K4J2 (/IPI) |
There are 6 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
28 |
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
(18 more) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
26 |
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
O08791 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
(16 more) |
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
21 |
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
(11 more) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
7 | O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | Q9H4W6 (/IMP) Q9H4W6 (/IMP) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | O73742 (/ISS) O73742 (/ISS) |
There are 4 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
21 |
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
Q07802 (/IDA)
(11 more) |
|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
19 |
Q07802 (/TAS)
Q07802 (/TAS)
Q07802 (/TAS)
Q07802 (/TAS)
Q07802 (/TAS)
Q07802 (/TAS)
Q07802 (/TAS)
Q07802 (/TAS)
Q07802 (/TAS)
Q07802 (/TAS)
(9 more) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | O08791 (/ISS) O08791 (/ISS) O08791 (/ISS) O08791 (/ISS) O08791 (/ISS) O08791 (/ISS) O08791 (/ISS) O73742 (/ISS) O73742 (/ISS) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) O08791 (/ISO) |
