The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"YEATS domain
".
FunFam 2: YEATS domain-containing protein 4
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 7 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
44 |
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
(34 more) |
Protein C-terminus binding GO:0008022
Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
|
25 |
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
(15 more) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
19 |
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
(9 more) |
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
19 |
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
(9 more) |
Structural constituent of cytoskeleton GO:0005200
The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
|
19 |
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
(9 more) |
Protein C-terminus binding GO:0008022
Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
|
19 |
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
O95619 (/IPI)
(9 more) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
1 | Q21501 (/ISS) |
There are 15 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
|
25 |
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
(15 more) |
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
|
25 |
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
(15 more) |
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
|
25 |
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
(15 more) |
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
|
25 |
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
(15 more) |
Mitotic cell cycle GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
|
19 |
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
(9 more) |
Histone H4 acetylation GO:0043967
The modification of histone H4 by the addition of an acetyl group.
|
19 |
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
(9 more) |
Histone H2A acetylation GO:0043968
The modification of histone H2A by the addition of an acetyl group.
|
19 |
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
(9 more) |
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
19 |
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
(9 more) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
19 |
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
(9 more) |
RNA interference GO:0016246
The process in which double-stranded RNAs silence cognate genes. Involves posttranscriptional gene inactivation ('silencing') both of transgenes or dsRNA introduced into a germline, and of the host gene(s) homologous to the transgenes or dsRNA. This silencing is triggered by the introduction of transgenes or double-stranded RNA (dsRNA), and can occur through a specific decrease in the level of mRNA, or by negative regulation of translation, of both host genes and transgenes.
|
2 | Q21501 (/IMP) Q9VM63 (/IMP) |
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
1 | Q9VM63 (/ISS) |
Histone acetylation GO:0016573
The modification of a histone by the addition of an acetyl group.
|
1 | Q9VM63 (/IDA) |
Histone exchange GO:0043486
The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.
|
1 | Q9VM63 (/IDA) |
Heterochromatin organization involved in chromatin silencing GO:0070868
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin and contributes to chromatin silencing.
|
1 | Q9VM63 (/IMP) |
Protein localization to heterochromatin GO:0097355
Any process in which a protein is transported to, or maintained at, a part of a chromosome that is organized into heterochromatin.
|
1 | Q9VM63 (/IMP) |
There are 14 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
44 |
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
(34 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
25 |
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
(15 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
25 |
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
(15 more) |
Nuclear membrane GO:0031965
Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
|
25 |
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
(15 more) |
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
|
25 |
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
Q9CR11 (/ISO)
(15 more) |
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
|
25 |
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
Q9CR11 (/ISS)
(15 more) |
NuA4 histone acetyltransferase complex GO:0035267
A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60).
|
20 |
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
(10 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
19 |
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
O95619 (/TAS)
(9 more) |
Nuclear matrix GO:0016363
The dense fibrillar network lying on the inner side of the nuclear membrane.
|
19 |
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
O95619 (/NAS)
(9 more) |
Nuclear membrane GO:0031965
Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
|
19 |
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
O95619 (/IDA)
(9 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | B2RYE9 (/IDA) Q9VM63 (/IDA) |
Histone acetyltransferase complex GO:0000123
A protein complex that possesses histone acetyltransferase activity.
|
1 | Q9VM63 (/IPI) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q9VM63 (/ISS) |
Transcription factor TFIID complex GO:0005669
A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.
|
1 | Q9VM63 (/ISS) |