The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 20: 60S ribosomal protein L6

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 12 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
5 Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
5 Q02878 (/NAS) Q02878 (/NAS) Q02878 (/NAS) Q02878 (/NAS) Q02878 (/NAS)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Cadherin binding GO:0045296
Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
5 Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA)
TRNA binding GO:0000049
Interacting selectively and non-covalently with transfer RNA.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
5.8S rRNA binding GO:1990932
Interacting selectively and non-covalently with 5.8S ribosomal RNA, a eukaryotic ribosomal RNA which forms a complex with 28S RNA.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
TRNA binding GO:0000049
Interacting selectively and non-covalently with transfer RNA.
1 P21533 (/IDA)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
1 P21533 (/IDA)
5.8S rRNA binding GO:1990932
Interacting selectively and non-covalently with 5.8S ribosomal RNA, a eukaryotic ribosomal RNA which forms a complex with 28S RNA.
1 P21533 (/IDA)

There are 12 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
8 P21533 (/ISS) P47911 (/ISS) P47911 (/ISS) P47911 (/ISS) Q2YGT9 (/ISS) Q58DQ3 (/ISS) Q58DQ3 (/ISS) Q6QMZ4 (/ISS)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
5 Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA)
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
5 Q02878 (/NAS) Q02878 (/NAS) Q02878 (/NAS) Q02878 (/NAS) Q02878 (/NAS)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
Pancreas development GO:0031016
The process whose specific outcome is the progression of the pancreas over time, from its formation to the mature structure. The pancreas is an endoderm derived structure that produces precursors of digestive enzymes and blood glucose regulating enzymes.
2 Q567N5 (/IMP) Q6DRC6 (/IMP)
Chordate embryonic development GO:0043009
The process whose specific outcome is the progression of the embryo over time, from zygote formation through a stage including a notochord and neural tube until birth or egg hatching.
2 Q567N5 (/IMP) Q6DRC6 (/IMP)

There are 26 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
8 P21533 (/ISS) P47911 (/ISS) P47911 (/ISS) P47911 (/ISS) Q2YGT9 (/ISS) Q58DQ3 (/ISS) Q58DQ3 (/ISS) Q6QMZ4 (/ISS)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
7 P47911 (/ISS) P47911 (/ISS) P47911 (/ISS) Q2YGT9 (/ISS) Q58DQ3 (/ISS) Q58DQ3 (/ISS) Q6QMZ4 (/ISS)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
6 P21533 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
5 Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Focal adhesion GO:0005925
Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
5 Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
5 Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
5 Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA) Q02878 (/HDA)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
5 Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS) Q02878 (/TAS)
Cytoplasmic ribonucleoprotein granule GO:0036464
A ribonucleoprotein granule located in the cytoplasm.
5 Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA)
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
5 Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA) Q02878 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
3 P47911 (/EXP) P47911 (/EXP) P47911 (/EXP)
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
3 P47911 (/IDA) P47911 (/IDA) P47911 (/IDA)
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
A band GO:0031672
The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
Cytoplasmic ribonucleoprotein granule GO:0036464
A ribonucleoprotein granule located in the cytoplasm.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
Polysomal ribosome GO:0042788
A ribosome bound to mRNA that forms part of a polysome.
3 P47911 (/ISO) P47911 (/ISO) P47911 (/ISO)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
3 P47911 (/EXP) P47911 (/EXP) P47911 (/EXP)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
3 P47911 (/IDA) P47911 (/IDA) P47911 (/IDA)
Large ribosomal subunit GO:0015934
The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
1 Q2YGT9 (/IDA)
A band GO:0031672
The dark-staining region of a sarcomere, in which myosin thick filaments are present; the center is traversed by the paler H zone, which in turn contains the M line.
1 P21533 (/IDA)
Cytoplasmic side of rough endoplasmic reticulum membrane GO:0098556
The side (leaflet) of the rough endoplasmic reticulum membrane that faces the cytoplasm.
1 Q2YGT9 (/IDA)
CATH-Gene3D is a Global Biodata Core Resource Learn more...