CATH Superfamily 2.30.30.30
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 14: 60S ribosomal protein L6
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 7 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
18 |
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
Q02326 (/IDA)
Q02326 (/IDA)
Q02326 (/IDA)
(8 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
14 |
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
Q02326 (/IDA)
Q02326 (/IDA)
Q02326 (/IDA)
(4 more) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
4 | A0A1D8PCX8 (/NAS) A0A1D8PCX8 (/NAS) A0A1D8PCX8 (/NAS) A0A1D8PCX8 (/NAS) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | Q9V9W2 (/HDA) Q9V9W3 (/HDA) |
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
|
2 | Q9V9W2 (/TAS) Q9V9W3 (/TAS) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
1 | Q9C9C6 (/IDA) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
1 | P47991 (/IPI) |
There are 11 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Ribosomal large subunit assembly GO:0000027
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit.
|
14 |
P05739 (/IMP)
P05739 (/IMP)
P05739 (/IMP)
P05739 (/IMP)
P05739 (/IMP)
P05739 (/IMP)
P05739 (/IMP)
Q02326 (/IMP)
Q02326 (/IMP)
Q02326 (/IMP)
(4 more) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
14 |
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
Q02326 (/IDA)
Q02326 (/IDA)
Q02326 (/IDA)
(4 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
4 | A0A1D8PCX8 (/NAS) A0A1D8PCX8 (/NAS) A0A1D8PCX8 (/NAS) A0A1D8PCX8 (/NAS) |
Cellular response to starvation GO:0009267
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment.
|
4 | A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) |
Filamentous growth GO:0030447
The process in which a multicellular organism, a unicellular organism or a group of unicellular organisms grow in a threadlike, filamentous shape.
|
4 | A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) |
Filamentous growth of a population of unicellular organisms in response to starvation GO:0036170
The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to deprivation of nourishment.
|
4 | A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) |
Filamentous growth of a population of unicellular organisms in response to biotic stimulus GO:0036180
The process in which a group of unicellular organisms grow in a threadlike, filamentous shape in response to a biotic (living) stimulus.
|
4 | A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) A0A1D8PCX8 (/IMP) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | Q9V9W2 (/IC) Q9V9W3 (/IC) |
Cytoplasmic translation GO:0002181
The chemical reactions and pathways resulting in the formation of a protein in the cytoplasm. This is a ribosome-mediated process in which the information in messenger RNA (mRNA) is used to specify the sequence of amino acids in the protein.
|
2 | Q9V9W2 (/TAS) Q9V9W3 (/TAS) |
Determination of adult lifespan GO:0008340
The control of viability and duration in the adult phase of the life-cycle.
|
1 | P47991 (/IMP) |
Response to cytokinin GO:0009735
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus.
|
1 | Q9FZ76 (/IDA) |
There are 13 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
18 |
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
P05739 (/IDA)
Q02326 (/IDA)
Q02326 (/IDA)
Q02326 (/IDA)
(8 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
7 | A0A1D8PCX8 (/IDA) A0A1D8PCX8 (/IDA) A0A1D8PCX8 (/IDA) A0A1D8PCX8 (/IDA) Q9C9C5 (/IDA) Q9C9C5 (/IDA) Q9FZ76 (/IDA) |
Cell surface GO:0009986
The external part of the cell wall and/or plasma membrane.
|
4 | A0A1D8PCX8 (/IDA) A0A1D8PCX8 (/IDA) A0A1D8PCX8 (/IDA) A0A1D8PCX8 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
3 | Q9C9C5 (/IDA) Q9C9C5 (/IDA) Q9FZ76 (/IDA) |
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
|
3 | Q9C9C5 (/IDA) Q9C9C5 (/IDA) Q9FZ76 (/IDA) |
Plasmodesma GO:0009506
A fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell.
|
3 | Q9C9C5 (/IDA) Q9C9C5 (/IDA) Q9FZ76 (/IDA) |
Cytosolic large ribosomal subunit GO:0022625
The large subunit of a ribosome located in the cytosol.
|
2 | Q9V9W2 (/TAS) Q9V9W3 (/TAS) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
2 | Q9V9W2 (/HDA) Q9V9W3 (/HDA) |
Cytosolic ribosome GO:0022626
A ribosome located in the cytosol.
|
2 | Q9C9C6 (/IDA) Q9FZ76 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | Q9C9C6 (/IDA) |
Endoplasmic reticulum GO:0005783
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
|
1 | Q9FZ76 (/IDA) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
1 | Q9FZ76 (/IDA) |
Extracellular matrix GO:0031012
A structure lying external to one or more cells, which provides structural support, biochemical or biomechanical cues for cells or tissues.
|
1 | Q54D63 (/HDA) |