The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 16: Small nuclear ribonucleoprotein Sm D1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
60 P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA)
(50 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
60 P62314 (/IPI) P62314 (/IPI) P62314 (/IPI) P62314 (/IPI) P62314 (/IPI) P62314 (/IPI) P62314 (/IPI) P62314 (/IPI) P62314 (/IPI) P62314 (/IPI)
(50 more)
U1 snRNP binding GO:1990446
Interacting selectively and non-covalently with any part of a U1 small nuclear ribonucleoprotein particle.
60 B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA)
(50 more)
U1 snRNP binding GO:1990446
Interacting selectively and non-covalently with any part of a U1 small nuclear ribonucleoprotein particle.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
2 Q9SY09 (/IDA) Q9SY09 (/IDA)

There are 16 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
Spliceosomal complex assembly GO:0000245
The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
60 P62314 (/IC) P62314 (/IC) P62314 (/IC) P62314 (/IC) P62314 (/IC) P62314 (/IC) P62314 (/IC) P62314 (/IC) P62314 (/IC) P62314 (/IC)
(50 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
Import into nucleus GO:0051170
The directed movement of substances into the nucleus.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
Heart development GO:0007507
The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
7 B8JKY9 (/IMP) Q8JHH1 (/IMP) Q8JHH1 (/IMP) Q8JHH1 (/IMP) Q8JHH1 (/IMP) Q8JHH1 (/IMP) Q8JHH1 (/IMP)
Posttranscriptional gene silencing by RNA GO:0035194
Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger RNA (often mRNA) degradation or negatively regulate mRNA translation.
3 Q9SSF1 (/IMP) Q9SY09 (/IMP) Q9SY09 (/IMP)
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
2 Q9SY09 (/IMP) Q9SY09 (/IMP)
Regulation of RNA splicing GO:0043484
Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
2 Q9SY09 (/IMP) Q9SY09 (/IMP)

There are 45 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
181 B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA)
(171 more)
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
U4 snRNP GO:0005687
A ribonucleoprotein complex that contains small nuclear RNA U4.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
Methylosome GO:0034709
A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
PICln-Sm protein complex GO:0034715
A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
SMN-Sm protein complex GO:0034719
A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
U2-type catalytic step 2 spliceosome GO:0071007
A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs.
180 P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS) P62315 (/ISS)
(170 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
120 Q3ZC10 (/ISS) Q3ZC10 (/ISS) Q3ZC10 (/ISS) Q3ZC10 (/ISS) Q3ZC10 (/ISS) Q3ZC10 (/ISS) Q3ZC10 (/ISS) Q3ZC10 (/ISS) Q3ZC10 (/ISS) Q3ZC10 (/ISS)
(110 more)
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
120 B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA) B2RZB7 (/IDA)
(110 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
61 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(51 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
60 P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA) P62314 (/HDA)
(50 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
60 P62314 (/IMP) P62314 (/IMP) P62314 (/IMP) P62314 (/IMP) P62314 (/IMP) P62314 (/IMP) P62314 (/IMP) P62314 (/IMP) P62314 (/IMP) P62314 (/IMP)
(50 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
U4 snRNP GO:0005687
A ribonucleoprotein complex that contains small nuclear RNA U4.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
U4 snRNP GO:0005687
A ribonucleoprotein complex that contains small nuclear RNA U4.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
U12-type spliceosomal complex GO:0005689
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
U12-type spliceosomal complex GO:0005689
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
60 P62315 (/IDA) P62315 (/IDA) P62315 (/IDA) P62315 (/IDA) P62315 (/IDA) P62315 (/IDA) P62315 (/IDA) P62315 (/IDA) P62315 (/IDA) P62315 (/IDA)
(50 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
Small nuclear ribonucleoprotein complex GO:0030532
A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
60 P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS) P62314 (/TAS)
(50 more)
Methylosome GO:0034709
A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
Methylosome GO:0034709
A large (20 S) protein complex that possesses protein arginine methyltransferase activity and modifies specific arginines to dimethylarginines in the arginine- and glycine-rich domains of several spliceosomal Sm proteins, thereby targeting these proteins to the survival of motor neurons (SMN) complex for assembly into small nuclear ribonucleoprotein (snRNP) core particles. Proteins found in the methylosome include the methyltransferase JBP1 (PRMT5), pICln (CLNS1A), MEP50 (WDR77), and unmethylated forms of SM proteins that have RG domains.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
PICln-Sm protein complex GO:0034715
A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
PICln-Sm protein complex GO:0034715
A protein complex that contains pICln (CLNS1A) and several Sm proteins, including SmD1, SmD2, SmE, SmF, and SmG.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
SMN-Sm protein complex GO:0034719
A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
SMN-Sm protein complex GO:0034719
A protein complex formed by the association of several methylated Sm proteins with the SMN complex; the latter contains the survival motor neuron (SMN) protein and at least eight additional integral components, including the Gemin2-8 and unrip proteins; additional proteins, including galectin-1 and galectin-3, are also found in the SMN-SM complex. The SMN-Sm complex is involved in spliceosomal snRNP assembly in the cytoplasm.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
U4/U6 x U5 tri-snRNP complex GO:0046540
A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
U2-type catalytic step 2 spliceosome GO:0071007
A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
U2-type catalytic step 2 spliceosome GO:0071007
A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
60 P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA) P62314 (/IDA)
(50 more)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
60 P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO) P62315 (/ISO)
(50 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
3 Q9SSF1 (/IDA) Q9SY09 (/IDA) Q9SY09 (/IDA)
Vacuolar membrane GO:0005774
The lipid bilayer surrounding the vacuole and separating its contents from the cytoplasm of the cell.
3 Q9SSF1 (/IDA) Q9SY09 (/IDA) Q9SY09 (/IDA)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
3 Q9SSF1 (/IDA) Q9SY09 (/IDA) Q9SY09 (/IDA)
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
2 Q9SY09 (/IDA) Q9SY09 (/IDA)
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