The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"SET domain
".
FunFam 13: Histone-lysine N-methyltransferase SMYD1 isoform 1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 13 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Histone deacetylase binding GO:0042826
Interacting selectively and non-covalently with the enzyme histone deacetylase.
|
10 | A1ZAP0 (/ISS) O46040 (/ISS) O46040 (/ISS) P83501 (/ISS) Q7KMH5 (/ISS) Q8IR97 (/ISS) Q8SWU5 (/ISS) Q8SYH2 (/ISS) Q9VZ41 (/ISS) Q9W373 (/ISS) |
RNA polymerase II complex binding GO:0000993
Interacting selectively and non-covalently with RNA polymerase II core enzyme, a multisubunit eukaryotic nuclear RNA polymerase typically composed of twelve subunits.
|
7 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) Q9NRG4 (/ISS) |
Protein-lysine N-methyltransferase activity GO:0016279
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate.
|
7 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) Q9W373 (/ISS) |
Histone methyltransferase activity (H3-K36 specific) GO:0046975
Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 36) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 36). This reaction is the addition of a methyl group onto lysine at position 36 of the histone H3 protein.
|
7 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) Q9NRG4 (/ISS) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
3 | P97443 (/IPI) Q8NB12 (/IPI) Q9NRG4 (/IPI) |
S-adenosylmethionine-dependent methyltransferase activity GO:0008757
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
|
3 | O46040 (/ISS) O46040 (/ISS) P83501 (/ISS) |
Myosin binding GO:0017022
Interacting selectively and non-covalently with any part of a myosin complex; myosins are any of a superfamily of molecular motor proteins that bind to actin and use the energy of ATP hydrolysis to generate force and movement along actin filaments.
|
2 | Q2MJQ8 (/IDA) Q2MJQ9 (/IDA) |
Histone methyltransferase activity (H3-K4 specific) GO:0042800
Catalysis of the reaction: S-adenosyl-L-methionine + histone H3 L-lysine (position 4) = S-adenosyl-L-homocysteine + histone H3 N6-methyl-L-lysine (position 4). This reaction is the addition of a methyl group onto lysine at position 4 of the histone H3 protein.
|
2 | Q2MJQ8 (/IDA) Q2MJQ9 (/IDA) |
P53 binding GO:0002039
Interacting selectively and non-covalently with one of the p53 family of proteins.
|
1 | Q9NRG4 (/IPI) |
Transcription corepressor activity GO:0003714
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to repress the transcription of specific genes. Corepressors often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class occludes DNA-binding transcription factor protein-protein interaction domains. A fourth class of corepressors prevents interactions of DNA bound DNA-binding transcription factor with coactivators.
|
1 | P97443 (/IDA) |
Lysine N-methyltransferase activity GO:0016278
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue.
|
1 | Q9NRG4 (/TAS) |
Protein-lysine N-methyltransferase activity GO:0016279
Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the epsilon-amino group of a lysine residue in a protein substrate.
|
1 | Q9NRG4 (/IDA) |
Histone-lysine N-methyltransferase activity GO:0018024
Catalysis of the reaction: S-adenosyl-L-methionine + histone L-lysine = S-adenosyl-L-homocysteine + histone N6-methyl-L-lysine. The methylation of peptidyl-lysine in histones forms N6-methyl-L-lysine, N6,N6-dimethyl-L-lysine and N6,N6,N6-trimethyl-L-lysine derivatives.
|
1 | O94256 (/ISM) |
There are 36 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Negative regulation of gene expression GO:0010629
Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
10 | A1ZAP0 (/ISS) O46040 (/ISS) O46040 (/ISS) P83501 (/ISS) Q7KMH5 (/ISS) Q8IR97 (/ISS) Q8SWU5 (/ISS) Q8SYH2 (/ISS) Q9VZ41 (/ISS) Q9W373 (/ISS) |
Negative regulation of cell population proliferation GO:0008285
Any process that stops, prevents or reduces the rate or extent of cell proliferation.
|
7 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) Q9NRG4 (/ISS) |
Peptidyl-lysine dimethylation GO:0018027
The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine.
|
7 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) Q9NRG4 (/ISS) |
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
6 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) |
Peptidyl-lysine monomethylation GO:0018026
The methylation of peptidyl-lysine to form peptidyl-N6-methyl-L-lysine.
|
6 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) |
Regulation of DNA damage response, signal transduction by p53 class mediator GO:0043516
Any process that modulates the frequency, rate or extent of the cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage.
|
6 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) |
Skeletal myofibril assembly GO:0014866
The process whose specific outcome is the progression of the skeletal myofibril over time, from its formation to the mature structure. A skeletal myofibril is a myofibril specific to skeletal muscle cells.
|
5 | F1QDG9 (/IMP) F8W4X0 (/IMP) Q2MJQ8 (/IMP) Q2MJQ9 (/IMP) Q6P0R5 (/IMP) |
Skeletal muscle thin filament assembly GO:0030240
The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in skeletal muscle.
|
5 | F1QDG9 (/IGI) F8W4X0 (/IGI) Q2MJQ8 (/IGI) Q2MJQ9 (/IGI) Q6P0R5 (/IGI) |
Skeletal muscle myosin thick filament assembly GO:0030241
The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in skeletal muscle.
|
5 | F1QDG9 (/IGI) F8W4X0 (/IGI) Q2MJQ8 (/IGI) Q2MJQ9 (/IGI) Q6P0R5 (/IGI) |
Sarcomere organization GO:0045214
The myofibril assembly process that results in the organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
|
5 | F1QDG9 (/IGI) F8W4X0 (/IGI) Q2MJQ8 (/IGI) Q2MJQ9 (/IGI) Q6P0R5 (/IGI) |
Sarcomere organization GO:0045214
The myofibril assembly process that results in the organization of muscle actomyosin into sarcomeres. The sarcomere is the repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
|
5 | F1QDG9 (/IMP) F8W4X0 (/IMP) Q2MJQ8 (/IMP) Q2MJQ9 (/IMP) Q6P0R5 (/IMP) |
Thigmotaxis GO:0001966
The directed movement of a motile cell or organism in response to touch.
|
3 | F1QDG9 (/IMP) F8W4X0 (/IMP) Q6P0R5 (/IMP) |
Histone lysine methylation GO:0034968
The modification of a histone by addition of one or more methyl groups to a lysine residue.
|
3 | O46040 (/ISS) O46040 (/ISS) P83501 (/ISS) |
Myofibril assembly GO:0030239
Formation of myofibrils, the repeating units of striated muscle.
|
2 | Q2MJQ8 (/IMP) Q2MJQ9 (/IMP) |
Skeletal muscle thin filament assembly GO:0030240
The aggregation, arrangement and bonding together of proteins to form the actin-based thin filaments of myofibrils in skeletal muscle.
|
2 | Q2MJQ8 (/IMP) Q2MJQ9 (/IMP) |
Skeletal muscle myosin thick filament assembly GO:0030241
The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in skeletal muscle.
|
2 | Q2MJQ8 (/IMP) Q2MJQ9 (/IMP) |
Sarcomerogenesis GO:0048769
The process in which sarcomeres are added in series within a fiber.
|
2 | Q2MJQ8 (/IMP) Q2MJQ9 (/IMP) |
Histone H3-K4 methylation GO:0051568
The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone.
|
2 | Q2MJQ8 (/IDA) Q2MJQ9 (/IDA) |
Heart contraction GO:0060047
The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body.
|
2 | Q2MJQ8 (/IMP) Q2MJQ9 (/IMP) |
Cardiac muscle myosin thick filament assembly GO:0071690
The aggregation, arrangement and bonding together of proteins to form the myosin-based thick filaments of myofibrils in cardiac muscle.
|
2 | Q2MJQ8 (/IMP) Q2MJQ9 (/IMP) |
Negative regulation of transcription by RNA polymerase II GO:0000122
Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
1 | Q9NRG4 (/IMP) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
1 | P97443 (/IPI) |
Heart development GO:0007507
The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
|
1 | Q5RGL7 (/IGI) |
Heart development GO:0007507
The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
|
1 | P97443 (/IMP) |
Positive regulation of myotube differentiation GO:0010831
Any process that activates, maintains or increases the frequency, rate or extent of myotube differentiation. Myotube differentiation is the process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
|
1 | Q8NB12 (/IDA) |
Positive regulation of myotube differentiation GO:0010831
Any process that activates, maintains or increases the frequency, rate or extent of myotube differentiation. Myotube differentiation is the process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
|
1 | P97443 (/ISO) |
Histone modification GO:0016570
The covalent alteration of one or more amino acid residues within a histone protein.
|
1 | O94256 (/NAS) |
Peptidyl-lysine monomethylation GO:0018026
The methylation of peptidyl-lysine to form peptidyl-N6-methyl-L-lysine.
|
1 | Q9NRG4 (/IDA) |
Skeletal muscle cell differentiation GO:0035914
The process in which a relatively unspecialized cell acquires specialized features of a skeletal muscle cell, a somatic cell located in skeletal muscle.
|
1 | P97443 (/IMP) |
Compound eye photoreceptor development GO:0042051
The process whose specific outcome is the progression of a light-responsive receptor in the compound eye over time, from its formation to the mature structure.
|
1 | Q7KMH5 (/IMP) |
Regulation of DNA damage response, signal transduction by p53 class mediator GO:0043516
Any process that modulates the frequency, rate or extent of the cascade of processes induced by the cell cycle regulator phosphoprotein p53, or an equivalent protein, in response to the detection of DNA damage.
|
1 | Q9NRG4 (/IMP) |
Positive regulation of myoblast differentiation GO:0045663
Any process that activates or increases the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
|
1 | Q8NB12 (/IDA) |
Positive regulation of myoblast differentiation GO:0045663
Any process that activates or increases the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
|
1 | P97443 (/ISO) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
1 | P97443 (/IDA) |
Heart contraction GO:0060047
The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body.
|
1 | Q5RGL7 (/IGI) |
Regulation of signal transduction by p53 class mediator GO:1901796
Any process that modulates the frequency, rate or extent of signal transduction by p53 class mediator.
|
1 | Q9NRG4 (/TAS) |
There are 12 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
10 | P97443 (/IDA) Q57TW0 (/IDA) Q57TW0 (/IDA) Q7KMH5 (/IDA) Q8IR97 (/IDA) Q8SWU5 (/IDA) Q8SYH2 (/IDA) Q9NRG4 (/IDA) Q9VZ41 (/IDA) Q9W373 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | P97443 (/IDA) Q7KMH5 (/IDA) Q8IR97 (/IDA) Q8SWU5 (/IDA) Q8SYH2 (/IDA) Q9VZ41 (/IDA) Q9W373 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) Q9NRG4 (/ISS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
7 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) Q9NRG4 (/ISS) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
7 | C3RZA1 (/ISS) E1C5V0 (/ISS) Q0P585 (/ISS) Q5RGL7 (/ISS) Q6GN68 (/ISS) Q7ZXV5 (/ISS) Q9NRG4 (/ISS) |
M band GO:0031430
The midline of aligned thick filaments in a sarcomere; location of specific proteins that link thick filaments. Depending on muscle type the M band consists of different numbers of M lines.
|
5 | F1QDG9 (/IDA) F8W4X0 (/IDA) Q2MJQ8 (/IDA) Q2MJQ9 (/IDA) Q6P0R5 (/IDA) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
3 | O46040 (/ISS) O46040 (/ISS) P83501 (/ISS) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
1 | O94256 (/IC) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O94256 (/HDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q9NRG4 (/TAS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q4QAG2 (/ISO) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | O94256 (/HDA) |