The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:
"YVTN repeat-like/Quinoprotein amine dehydrogenase
".
FunFam 229: Small nuclear ribonucleoprotein U5 subunit 40
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
13 |
O94620 (/IPI)
Q96DI7 (/IPI)
Q96DI7 (/IPI)
Q96DI7 (/IPI)
Q96DI7 (/IPI)
Q96DI7 (/IPI)
Q96DI7 (/IPI)
Q96DI7 (/IPI)
Q96DI7 (/IPI)
Q96DI7 (/IPI)
(3 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
12 |
Q96DI7 (/HDA)
Q96DI7 (/HDA)
Q96DI7 (/HDA)
Q96DI7 (/HDA)
Q96DI7 (/HDA)
Q96DI7 (/HDA)
Q96DI7 (/HDA)
Q96DI7 (/HDA)
Q96DI7 (/HDA)
Q96DI7 (/HDA)
(2 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | Q9VPL0 (/ISS) |
There are 7 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
13 |
Q96DI7 (/IC)
Q96DI7 (/IC)
Q96DI7 (/IC)
Q96DI7 (/IC)
Q96DI7 (/IC)
Q96DI7 (/IC)
Q96DI7 (/IC)
Q96DI7 (/IC)
Q96DI7 (/IC)
Q96DI7 (/IC)
(3 more) |
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
|
12 |
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
(2 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
12 |
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
(2 more) |
RNA processing GO:0006396
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
|
12 |
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
(2 more) |
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
12 |
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
(2 more) |
Mitotic cell cycle GO:0000278
Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent.
|
1 | Q9VPL0 (/HMP) |
MRNA cis splicing, via spliceosome GO:0045292
The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
|
1 | O94620 (/IC) |
There are 19 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
24 |
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
(14 more) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
24 |
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
A0MNP2 (/IDA)
(14 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
12 |
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
(2 more) |
U5 snRNP GO:0005682
A ribonucleoprotein complex that contains small nuclear RNA U5.
|
12 |
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
Q96DI7 (/TAS)
(2 more) |
Small nucleolar ribonucleoprotein complex GO:0005732
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
|
12 |
Q96DI7 (/NAS)
Q96DI7 (/NAS)
Q96DI7 (/NAS)
Q96DI7 (/NAS)
Q96DI7 (/NAS)
Q96DI7 (/NAS)
Q96DI7 (/NAS)
Q96DI7 (/NAS)
Q96DI7 (/NAS)
Q96DI7 (/NAS)
(2 more) |
U2-type catalytic step 2 spliceosome GO:0071007
A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs.
|
12 |
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
(2 more) |
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
|
12 |
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
Q96DI7 (/IDA)
(2 more) |
Cul4-RING E3 ubiquitin ligase complex GO:0080008
A ubiquitin ligase complex in which a cullin from the Cul4 family and a RING domain protein form the catalytic core; substrate specificity is conferred by an adaptor protein.
|
2 | O22826 (/ISS) O22826 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O94620 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q55AR8 (/ISS) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
1 | O94620 (/IDA) |
U5 snRNP GO:0005682
A ribonucleoprotein complex that contains small nuclear RNA U5.
|
1 | O94620 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | Q6PE01 (/ISO) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
1 | Q6PE01 (/ISO) |
U2-type catalytic step 2 spliceosome GO:0071007
A spliceosomal complex that contains the U2, U5 and U6 snRNPs bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the U2, U5 and U6 snRNPs.
|
1 | Q6PE01 (/ISO) |
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
|
1 | Q9VPL0 (/HDA) |
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
|
1 | Q9VPL0 (/HDA) |
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
|
1 | Q6PE01 (/ISO) |
Post-mRNA release spliceosomal complex GO:0071014
A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and three snRNPs, including U5.
|
1 | O94620 (/IDA) |