CATH Superfamily 1.25.40.80
The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: Cryptochrome circadian regulator 2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 19 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
6 | A4QN37 (/IPI) Q08BE4 (/IPI) Q49AN0 (/IPI) Q49AN0 (/IPI) Q9I917 (/IPI) Q9R194 (/IPI) |
FAD binding GO:0071949
Interacting selectively and non-covalently with the oxidized form, FAD, of flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
|
4 | Q49AN0 (/ISS) Q49AN0 (/ISS) Q8QG60 (/ISS) Q923I8 (/ISS) |
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
|
3 | Q49AN0 (/ISS) Q49AN0 (/ISS) Q923I8 (/ISS) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
2 | Q49AN0 (/IDA) Q49AN0 (/IDA) |
Damaged DNA binding GO:0003684
Interacting selectively and non-covalently with damaged DNA.
|
2 | Q49AN0 (/IDA) Q49AN0 (/IDA) |
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
2 | Q49AN0 (/IDA) Q49AN0 (/IDA) |
Blue light photoreceptor activity GO:0009882
The function of absorbing and responding to electromagnetic radiation with a wavelength of approximately 400-470nm. The response may involve a change in conformation.
|
2 | Q49AN0 (/NAS) Q49AN0 (/NAS) |
Phosphatase binding GO:0019902
Interacting selectively and non-covalently with any phosphatase.
|
2 | Q49AN0 (/IPI) Q49AN0 (/IPI) |
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
|
1 | Q9R194 (/IDA) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | Q9R194 (/ISO) |
Showing 1 to 10 of 19 entries
There are 42 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
27 |
A0A0J9YJK7 (/IDA)
A0A2R8Q807 (/IDA)
A0A2R8QBE8 (/IDA)
A0A2R8QCA4 (/IDA)
A0A2R8QLW6 (/IDA)
A0A2R8QLY8 (/IDA)
A0A2R8QN27 (/IDA)
A0A2R8QPJ1 (/IDA)
A4QN37 (/IDA)
B0S7X5 (/IDA)
(17 more) |
Response to light stimulus GO:0009416
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
|
12 |
A0A2R8Q807 (/IDA)
A0A2R8QCA4 (/IDA)
A0A2R8QLY8 (/IDA)
A0A2R8QN27 (/IDA)
A4QN37 (/IDA)
B0S7X5 (/IDA)
Q08BE4 (/IDA)
Q503J5 (/IDA)
Q7ZU53 (/IDA)
Q9I913 (/IDA)
(2 more) |
Response to temperature stimulus GO:0009266
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
|
9 | A0A2R8Q807 (/IDA) A0A2R8QCA4 (/IDA) A0A2R8QLY8 (/IDA) A0A2R8QN27 (/IDA) B0S7X5 (/IDA) Q503J5 (/IDA) Q7ZU53 (/IDA) Q9I913 (/IDA) Q9I915 (/IDA) |
Circadian rhythm GO:0007623
Any biological process in an organism that recurs with a regularity of approximately 24 hours.
|
5 | Q49AN0 (/ISS) Q49AN0 (/ISS) Q5IZC5 (/ISS) Q8QG60 (/ISS) Q923I8 (/ISS) |
Response to light stimulus GO:0009416
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
|
5 | Q49AN0 (/ISS) Q49AN0 (/ISS) Q5IZC5 (/ISS) Q8QG60 (/ISS) Q923I8 (/ISS) |
Regulation of circadian rhythm GO:0042752
Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours.
|
5 | B0WRR9 (/ISS) Q49AN0 (/ISS) Q49AN0 (/ISS) Q8QG60 (/ISS) Q923I8 (/ISS) |
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
5 | B0WRR9 (/ISS) Q49AN0 (/ISS) Q49AN0 (/ISS) Q8QG60 (/ISS) Q923I8 (/ISS) |
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
4 | F1R1X1 (/IGI) Q1LWC5 (/IGI) Q7ZU27 (/IGI) Q9I916 (/IGI) |
Circadian regulation of gene expression GO:0032922
Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours.
|
4 | Q49AN0 (/ISS) Q49AN0 (/ISS) Q8QG60 (/ISS) Q923I8 (/ISS) |
Negative regulation of circadian rhythm GO:0042754
Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior.
|
4 | Q49AN0 (/ISS) Q49AN0 (/ISS) Q8QG60 (/ISS) Q923I8 (/ISS) |
Showing 1 to 10 of 42 entries
There are 16 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
10 | A4QN37 (/IDA) F1R1X1 (/IDA) Q08BE4 (/IDA) Q1LWC5 (/IDA) Q7ZU27 (/IDA) Q7ZU53 (/IDA) Q9I913 (/IDA) Q9I916 (/IDA) Q9I917 (/IDA) Q9R194 (/IDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
6 | A0A0D2X7Z3 (/IDA) A2I2P1 (/IDA) A2I2P1 (/IDA) Q49AN0 (/IDA) Q49AN0 (/IDA) Q5IZC5 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
5 | B0WRR9 (/ISS) Q49AN0 (/ISS) Q49AN0 (/ISS) Q8QG60 (/ISS) Q923I8 (/ISS) |
Transcription factor complex GO:0005667
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
|
5 | A4QN37 (/IPI) Q08BE4 (/IPI) Q7ZU53 (/IPI) Q9I913 (/IPI) Q9I917 (/IPI) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
5 | A0A0D2X7Z3 (/IDA) A2I2P1 (/IDA) A2I2P1 (/IDA) Q49AN0 (/IDA) Q49AN0 (/IDA) |
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
|
2 | Q49AN0 (/IDA) Q49AN0 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | Q7ZU53 (/IDA) Q9I913 (/IDA) |
Nuclear envelope lumen GO:0005641
The region between the two lipid bilayers of the nuclear envelope; 20-40 nm wide.
|
1 | B0WRR9 (/ISS) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q9R194 (/TAS) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | B0WRR9 (/ISS) |
Showing 1 to 10 of 16 entries