The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was named:

"
Phosphotransferase system, lactose/cellobiose-type IIA subunit
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 2: Vacuolar protein sorting-associated protein 4A

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 23 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
12 O75351 (/IPI) O75351 (/IPI) O75351 (/IPI) O75351 (/IPI) O75351 (/IPI) P46467 (/IPI) P46467 (/IPI) Q8VEJ9 (/IPI) Q8VEJ9 (/IPI) Q9UN37 (/IPI)
(2 more)
Protein C-terminus binding GO:0008022
Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
8 O75351 (/IPI) O75351 (/IPI) O75351 (/IPI) O75351 (/IPI) O75351 (/IPI) Q9UN37 (/IPI) Q9UN37 (/IPI) Q9UN37 (/IPI)
ATPase activity, coupled GO:0042623
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane.
8 O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) Q9UN37 (/NAS) Q9UN37 (/NAS) Q9UN37 (/NAS)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
5 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA)
ATPase activity, coupled GO:0042623
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane.
5 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
5 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA)
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
5 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA)
Protein C-terminus binding GO:0008022
Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
4 P46467 (/ISO) P46467 (/ISO) Q8VEJ9 (/ISO) Q8VEJ9 (/ISO)
ATPase activity GO:0016887
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
4 P46467 (/ISO) P46467 (/ISO) Q8VEJ9 (/ISO) Q8VEJ9 (/ISO)
ATP binding GO:0005524
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
3 Q9UN37 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP)
Showing 1 to 10 of 23 entries

There are 103 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway GO:0043162
The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation.
11 O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP) Q9Y162 (/IMP) Q9Y162 (/IMP)
(1 more)
Positive regulation of viral process GO:0048524
Any process that activates or increases the frequency, rate or extent of a multi-organism process in which a virus is a participant.
9 O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) P46467 (/IMP) P46467 (/IMP) Q8VEJ9 (/IMP) Q8VEJ9 (/IMP)
Nucleus organization GO:0006997
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus.
8 O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP)
Mitotic metaphase plate congression GO:0007080
The cell cycle process in which chromosomes are aligned at the metaphase plate, a plane halfway between the poles of the mitotic spindle, during mitosis.
8 O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP)
Endosomal transport GO:0016197
The directed movement of substances mediated by an endosome, a membrane-bounded organelle that carries materials enclosed in the lumen or located in the endosomal membrane.
8 O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) Q9UN37 (/TAS) Q9UN37 (/TAS) Q9UN37 (/TAS)
Macroautophagy GO:0016236
The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure. Autophagosomes then fuse with a lysosome (or vacuole) releasing single-membrane-bounded autophagic bodies that are then degraded within the lysosome (or vacuole). Some types of macroautophagy, e.g. pexophagy, mitophagy, involve selective targeting of the targets to be degraded.
8 O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) Q9UN37 (/NAS) Q9UN37 (/NAS) Q9UN37 (/NAS)
Viral life cycle GO:0019058
A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
8 O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) Q9UN37 (/TAS) Q9UN37 (/TAS) Q9UN37 (/TAS)
Viral release from host cell GO:0019076
The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
8 O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) O75351 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP) Q9UN37 (/IMP)
Multivesicular body assembly GO:0036258
The aggregation, arrangement and bonding together of a set of components to form a multivesicular body, a type of late endosome in which regions of the limiting endosomal membrane invaginate to form internal vesicles; membrane proteins that enter the internal vesicles are sequestered from the cytoplasm.
8 O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) O75351 (/NAS) Q9UN37 (/NAS) Q9UN37 (/NAS) Q9UN37 (/NAS)
Viral budding via host ESCRT complex GO:0039702
Viral budding which uses a host ESCRT protein complex, or complexes, to mediate the budding process.
8 O75351 (/IGI) O75351 (/IGI) O75351 (/IGI) O75351 (/IGI) O75351 (/IGI) Q9UN37 (/IGI) Q9UN37 (/IGI) Q9UN37 (/IGI)
Showing 1 to 10 of 103 entries

There are 36 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO TermAnnotationsEvidence
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
10 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) Q8VEJ9 (/IDA) Q8VEJ9 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA)
Spindle pole GO:0000922
Either of the ends of a spindle, where spindle microtubules are organized; usually contains a microtubule organizing center and accessory molecules, spindle microtubules and astral microtubules.
8 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
8 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA)
Endosome GO:0005768
A vacuole to which materials ingested by endocytosis are delivered.
8 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA)
Centrosome GO:0005813
A structure comprised of a core structure (in most organisms, a pair of centrioles) and peripheral material from which a microtubule-based structure, such as a spindle apparatus, is organized. Centrosomes occur close to the nucleus during interphase in many eukaryotic cells, though in animal cells it changes continually during the cell-division cycle.
8 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
8 O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) O75351 (/TAS) Q9UN37 (/TAS) Q9UN37 (/TAS) Q9UN37 (/TAS)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
8 O75351 (/HDA) O75351 (/HDA) O75351 (/HDA) O75351 (/HDA) O75351 (/HDA) Q9UN37 (/HDA) Q9UN37 (/HDA) Q9UN37 (/HDA)
Flemming body GO:0090543
A cell part that is the central region of the midbody characterized by a gap in alpha-tubulin staining. It is a dense structure of antiparallel microtubules from the central spindle in the middle of the intercellular bridge.
8 O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) O75351 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA)
Early endosome GO:0005769
A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
5 Q793F9 (/IDA) Q793F9 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
5 P46467 (/IDA) P46467 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA) Q9UN37 (/IDA)
Showing 1 to 10 of 36 entries
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