The name of this superfamily has been modified since the most recent official CATH+ release (v4_4_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 1: protein quaking isoform X1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 6 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
25 Q96PU8 (/HDA) Q96PU8 (/HDA) Q96PU8 (/HDA) Q96PU8 (/HDA) Q96PU8 (/HDA) Q96PU8 (/HDA) Q96PU8 (/HDA) Q96PU8 (/HDA) Q96PU8 (/HDA) Q96PU8 (/HDA)
(15 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
25 Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS)
(15 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
25 Q96PU8 (/IPI) Q96PU8 (/IPI) Q96PU8 (/IPI) Q96PU8 (/IPI) Q96PU8 (/IPI) Q96PU8 (/IPI) Q96PU8 (/IPI) Q96PU8 (/IPI) Q96PU8 (/IPI) Q96PU8 (/IPI)
(15 more)
Single-stranded RNA binding GO:0003727
Interacting selectively and non-covalently with single-stranded RNA.
1 Q32NN2 (/IMP)
Poly(U) RNA binding GO:0008266
Interacting selectively and non-covalently with a sequence of uracil residues in an RNA molecule.
1 Q32NN2 (/IMP)
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
1 Q32NN2 (/IMP)

There are 27 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Vasculogenesis GO:0001570
The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes.
25 Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP)
(15 more)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
25 Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO)
(15 more)
Spermatid development GO:0007286
The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure.
25 Q9QYS9 (/IGI) Q9QYS9 (/IGI) Q9QYS9 (/IGI) Q9QYS9 (/IGI) Q9QYS9 (/IGI) Q9QYS9 (/IGI) Q9QYS9 (/IGI) Q9QYS9 (/IGI) Q9QYS9 (/IGI) Q9QYS9 (/IGI)
(15 more)
Axon ensheathment GO:0008366
Any process in which the axon of a neuron is insulated, and that insulation maintained, thereby preventing dispersion of the electrical signal.
25 Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP)
(15 more)
Positive regulation of gene expression GO:0010628
Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
25 Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP)
(15 more)
Negative regulation of cardiac muscle cell apoptotic process GO:0010667
Any process that decreases the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death.
25 Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO)
(15 more)
Positive regulation of neuron projection development GO:0010976
Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
25 Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO)
(15 more)
Myelination GO:0042552
The process in which myelin sheaths are formed and maintained around neurons. Oligodendrocytes in the brain and spinal cord and Schwann cells in the peripheral nervous system wrap axons with compact layers of their plasma membrane. Adjacent myelin segments are separated by a non-myelinated stretch of axon called a node of Ranvier.
25 Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP)
(15 more)
Muscle cell differentiation GO:0042692
The process in which a relatively unspecialized cell acquires specialized features of a muscle cell.
25 Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP)
(15 more)
Long-chain fatty acid biosynthetic process GO:0042759
The chemical reactions and pathways resulting in the formation of long-chain fatty acids, any fatty acid with a chain length between C13 and C22.
25 Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP)
(15 more)
MRNA stabilization GO:0048255
Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules.
25 Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO)
(15 more)
Positive regulation of oligodendrocyte differentiation GO:0048714
Any process that activates or increases the frequency, rate or extent of oligodendrocyte differentiation.
25 Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO)
(15 more)
Skeletal myofibril assembly GO:0014866
The process whose specific outcome is the progression of the skeletal myofibril over time, from its formation to the mature structure. A skeletal myofibril is a myofibril specific to skeletal muscle cells.
2 Q6P0D0 (/IGI) Q6P104 (/IGI)
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
1 Q91XU1 (/IMP)
Gastrulation GO:0007369
A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
1 Q32NN2 (/IMP)
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
1 Q91XU1 (/IEP)
Skeletal muscle tissue development GO:0007519
The developmental sequence of events leading to the formation of adult skeletal muscle tissue. The main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers.
1 Q6P0D0 (/IMP)
Regulation of smoothened signaling pathway GO:0008589
Any process that modulates the frequency, rate or extent of smoothened signaling.
1 Q6P0D0 (/IMP)
Anterior/posterior axis specification GO:0009948
The establishment, maintenance and elaboration of the anterior/posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
1 Q32NN2 (/IMP)
Negative regulation of cardiac muscle cell apoptotic process GO:0010667
Any process that decreases the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death.
1 Q91XU1 (/IMP)
Positive regulation of neuron projection development GO:0010976
Any process that increases the rate, frequency or extent of neuron projection development. Neuron projection development is the process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
1 Q91XU1 (/IMP)
Notochord formation GO:0014028
The formation of the notochord from the chordamesoderm. The notochord is composed of large cells packed within a firm connective tissue sheath and is found in all chordates at the ventral surface of the neural tube. In vertebrates, the notochord contributes to the vertebral column.
1 Q32NN2 (/IMP)
Notochord development GO:0030903
The process whose specific outcome is the progression of the notochord over time, from its formation to the mature structure. The notochord is a mesoderm-derived structure located ventral of the developing nerve cord. In vertebrates, the notochord serves as a core around which other mesodermal cells form the vertebrae. In the most primitive chordates, which lack vertebrae, the notochord persists as a substitute for a vertebral column.
1 Q32NN2 (/IMP)
MRNA stabilization GO:0048255
Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules.
1 Q91XU1 (/IMP)
Positive regulation of oligodendrocyte differentiation GO:0048714
Any process that activates or increases the frequency, rate or extent of oligodendrocyte differentiation.
1 Q91XU1 (/IMP)
Notochord cell differentiation GO:0060034
The process in which relatively unspecialized cells acquire specialized structural and/or functional features cells that make up the notochord. Differentiation includes the processes involved in commitment of a cell to a notochord cell fate.
1 Q32NN2 (/IMP)
3'-UTR-mediated mRNA stabilization GO:0070935
An mRNA stabilization process in which one or more RNA-binding proteins associate with the 3'-untranslated region (UTR) of an mRNA.
1 Q6P0D0 (/IGI)

There are 9 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
26 Q91XU1 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA)
(16 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
26 Q32NN2 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP) Q9QYS9 (/IMP)
(16 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
25 Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO) Q9QYS9 (/ISO)
(15 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
25 Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS)
(15 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
25 Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA)
(15 more)
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
25 Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS) Q9QYS9 (/TAS)
(15 more)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
25 Q9QYS9 (/EXP) Q9QYS9 (/EXP) Q9QYS9 (/EXP) Q9QYS9 (/EXP) Q9QYS9 (/EXP) Q9QYS9 (/EXP) Q9QYS9 (/EXP) Q9QYS9 (/EXP) Q9QYS9 (/EXP) Q9QYS9 (/EXP)
(15 more)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
25 Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA) Q9QYS9 (/IDA)
(15 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
1 Q32NN2 (/IMP)
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