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CATH Superfamily 4.10.1000.10

Zinc finger, CCCH-type

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Zinc finger, CCCH-type
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.

Browse Functional Families

ID Function Family (FunFam) Name Total Sequences Enzyme? Structure? Structural Representative PDB Sites? Alignment Diversity (0-100)
1
zinc finger CCCH domain-containing protein 15-like
813
3D
 1m9oA00 - 96.9
2
Zinc finger protein 36, C3H1 type-like 1
628 - - 86.6
3
Zinc finger CCCH domain-containing protein
420 - - 98.1
4
roquin-1 isoform X2
366 - - 84.0
5
cleavage and polyadenylation specificity factor subunit 4
314
3D
 2rhkD00 - 63.9
6
Putative pre-mrna-splicing factor rbm22
270 - - 90.7
7
Zinc finger CCCH domain-containing protein 6
223 - - 74.8
8
zinc finger CCCH domain-containing protein 3
206 - - 93.4
9
probable helicase with zinc finger domain
191 - - 59.7
10
zinc finger CCCH domain-containing protein 15
167 - - 73.1
11
Zinc finger CCCH domain-containing protein 11
162 - - 72.9
12
cleavage and polyadenylation specificity factor subunit 4
149 - - 86.6
13
zinc finger CCCH domain-containing protein 4 isoform X1
136 - - 61.3
14
Zinc finger CCCH domain-containing protein 1
133 - - 50.2
15
Zinc finger CCCH domain-containing protein 13
127 - - 18.3
16
Zinc finger CCCH domain-containing protein
119 - - 85.7
17
Cleavage and polyadenylation specificity factor 30 kDa subunit
108 - - 89.7
18
Zinc finger protein
107 - - 99.1
19
cleavage and polyadenylation specificity factor subunit 4 isoform X2
97 - - 61.1
20
Translation machinery-associated protein 46
93 - - 73.1
21
Zinc finger CCCH domain-containing protein 17
80 - - 75.9
22
Zinc finger CCCH domain-containing protein 7
78 - - 93.5
23
Zinc finger CCCH domain-containing protein 18
73 - - 20.0
24
Zinc finger CCCH domain-containing protein 11A
65 - - 70.0
25
Zinc finger matrin-type protein 5
57 - - 81.3
26
Zinc finger CCCH domain-containing protein 11A
42 - - 78.5
27
Zinc finger protein, putative
41 - - 14.5
28
Zinc finger nuclease 2
40 - - 78.4
29
tRNA-dihydrouridine
47 P +
37 - - 95.1
30
CCCH type zinc finger protein
35 - - 75.1
32
Zinc finger CCCH-type containing 7A
33 - - 13.3
31
Cleavage and polyadenylation specific factor 4
33 - - 7.6
33
zinc finger CCCH domain-containing protein 37
31 - - 85.2
34
pre-mRNA-splicing factor RBM22
28 - - 30.9
35
CCCH zinc finger protein, variant
28 - - 90.5
36
Zinc finger CCCH domain-containing protein 4
28 - - 59.4
37
Zinc finger CCCH domain-containing protein 39
25 - - 69.9
38
putative ATP-dependent RNA helicase DHX57
25 - - 33.2
40
tRNA
guanine(26 2
21 - - 20.4
39
Putative RNA helicase family protein
21 - - 79.5
42
Gar2 protein
16 - - 17.0
41
Pre-mRNA-splicing factor CWC24
16 - - 35.2
43
tRNA methyltransferase 44 homolog
14 - - 85.3
44
Probable E3 ubiquitin-protein ligase makorin-2
13 - - 83.2
47
Makorin ring finger protein 1
12 - - 3.6
46
Pre-mRNA-splicing factor CWC24
12 - - 22.2
45
Zinc finger, CCCH-type
12 - - 73.2
53
Putative zinc finger CCCH domain-containing protein 48
10 - - 59.2
50
AGAP008634-PA
10 - - 74.9
52
Zinc finger CCCH domain-containing protein 33
10 - - 8.3
48
ZFP family member
10 - - 44.8
51
Cleavage and polyadenylation specificity factor 30 kDa subunit
10 - - 39.7
49
Protein CBG18471
10 - - 65.5
57
Expressed protein
9 - - 22.9
54
RING finger protein unkempt homolog
9 - - 12.6
56
Uncharacterized protein
9 - - 10.3
58
putative cleavage and polyadenylation specificity factor subunit 4-like protein
9 - - 67.3
55
Uncharacterized protein
9 - - 3.4
59
Putative zinc finger CCCH domain-containing protein 48
8 - - 7.3
61
Zinc finger CCCH domain-containing protein 3
7 - - 42.5
62
Uncharacterized protein
7 - - 37.2
60
Probable E3 ubiquitin-protein ligase makorin-3
7 - - 42.6
68
Zinc finger C-x8-C-x5-C-x3-H type
And similar
5 - - 13.6
65
Cysteine three histidine 1
5 - - 64.8
66
Zinc finger, matrin-type 5
5 - - 49.4
63
Zinc finger C-x8-C-x5-C-x3-H type
And similar
5 - - 8.1
67
Zinc finger C-x8-C-x5-C-x3-H type family protein
5 - - 16.3
64
Putative zinc finger domain-containing protein
5 - - 4.6
76
Zinc finger CCCH domain-containing protein 62
4 - - 40.3
78
Zinc finger protein family member, putative
4 - - 0.0
75
Zinc finger CCCH domain-containing protein 42
4 - - 37.1
71
Zinc finger protein family member
4 - - 0.0
69
Uncharacterized protein
4 - - 15.5
81
Uncharacterized protein
4 - - 74.6
79
PAN2-PAN3 deadenylation complex subunit PAN3
4 - - 4.3
73
Hypothetical_protein_-_conserved
4 - - 9.2
70
Uncharacterized protein
4 - - 25.8
72
Zinc finger protein family member
4 - - 0.0
74
GM22131
4 - - 11.2
77
Zinc finger C-x8-C-x5-C-x3-H type family protein
4 - - 0.0
80
Zinc finger CCCH domain-containing protein 3
4 - - 13.0
86
Zinc finger CCCH domain-containing protein 64
3 - - 12.9
85
FI03239p
3 - - 0.0
88
Uncharacterized protein
3 - - 35.3
93
Key regulator in ER unfolded protein response
3 - - 0.0
89
Zinc finger CCCH domain-containing protein 37
3 - - 8.5
94
Zinc finger CCCH domain-containing protein 34 isoform A
3 - - 5.4
92
Uncharacterized protein
3 - - 10.4
90
Zinc finger C-x8-C-x5-C-x3-H type family protein
3 - - 6.5
95
C3H-type transcription factor
3 - - 44.3
96
Zinc finger protein, putative
3 - - 64.4
83
Zinc finger C-x8-C-x5-C-x3-H type family protein
3 - - 33.1
84
RING finger protein unkempt homolog
3 - - 15.1
91
GH07148p
3 - - 14.9
82
Uncharacterized protein
3 - - 55.4
87
Zinc finger CCCH domain-containing protein 33
3 - - 0.0
104
Uncharacterized protein
2 - - 41.2
112
Predicted protein
2 - - 43.1
117
Predicted protein
2 - - 39.1
110
Expressed protein
2 - - 1.3
111
Predicted protein
2 - - 0.0
106
CCCH zinc finger protein
AFU_orthologue AFUA_8G04360
2 - - 0.0
109
Zinc finger C-x8-C-x5-C-x3-H type family protein
2 - - 0.0
97
Uncharacterized protein
2 - - 17.2
105
Uncharacterized protein
2 - - 1.3
113
Predicted protein
2 - - 40.5
114
Predicted protein
2 - - 0.0
98
Uncharacterized protein
2 - - 12.6
102
Uncharacterized protein
2 - - 7.0
107
Nuclear fragile X mental retardation-interacting protein 1-domain-containing protein
2 - - 0.0
100
Uncharacterized protein
2 - - 0.0
99
Zinc finger CCCH domain-containing protein 19
2 - - 0.0
108
An-Nup2 Nuclear pore complex protein
Eurofung
2 - - 0.0
101
Uncharacterized protein
2 - - 3.4
116
CCCH-type zinc finger-containing protein
2 - - 45.9
103
Uncharacterized protein
2 - - 0.0
115
Zinc finger CCCH domain-containing protein 3 isoform A
2 - - 0.0
153
Uncharacterized protein
1 - - 0.0
139
LP05025p
1 - - 0.0
124
Uncharacterized protein
1 - - 0.0
136
Uncharacterized protein
1 - - 0.0
144
Uncharacterized protein
1 - - 0.0
158
Uncharacterized protein
1 - - 0.0
135
Predicted protein
1 - - 0.0
151
Uncharacterized protein
1 - - 0.0
146
tRNA
guanine(26 2
1 - - 0.0
126
Uncharacterized protein
1 - - 0.0
134
AGL116Cp
1 - - 0.0
118
Pharynx and intestine in excess protein 1
1 - - 0.0
150
Dosage compensation regulator-like Protein
1 - - 0.0
129
Uncharacterized protein
1 - - 0.0
149
Uncharacterized protein
1 - - 0.0
157
Predicted protein
1 - - 0.0
125
Uncharacterized protein
1 - - 0.0
152
Zinc finger CCCH-type-containing 10
1 - - 0.0
145
Uncharacterized protein
1 - - 0.0
142
Predicted protein
1 - - 0.0
155
Uncharacterized protein
1 - - 0.0
131
Predicted protein
1 - - 0.0
138
Uncharacterized protein
1 - - 0.0
122
Uncharacterized protein
1 - - 0.0
120
Zinc finger CCCH domain-containing protein 17
1 - - 0.0
159
Uncharacterized protein
1 - - 0.0
140
Cleavage and polyadenylation specificity factor subunit 4-like Protein
1 - - 0.0
156
Uncharacterized protein
1 - - 0.0
147
Zinc finger protein
1 - - 0.0
133
Uncharacterized protein
1 - - 0.0
127
Uncharacterized protein
1 - - 0.0
119
Predicted protein
1 - - 0.0
132
Uncharacterized protein
1 - - 0.0
128
Uncharacterized protein
1 - - 0.0
141
tRNA-dihydrouridine
47 P +
1 - - 0.0
148
Protein CBG07225
1 - - 0.0
121
Uncharacterized protein
1 - - 0.0
137
Uncharacterized protein
1 - - 0.0
123
Uncharacterized protein
1 - - 0.0
143
Uncharacterized protein
1 - - 0.0
154
zinc finger CCCH domain-containing protein 10 isoform X2
1 - - 0.0
130
Uncharacterized protein
1 - - 0.0
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