The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 96: U2 snRNP auxiliary factor large subunit
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 10 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
36 |
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
(26 more) |
Pre-mRNA 3'-splice site binding GO:0030628
Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
|
28 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(18 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
26 |
P26368 (/HDA)
P26368 (/HDA)
P26368 (/HDA)
P26368 (/HDA)
P26368 (/HDA)
P26368 (/HDA)
P26368 (/HDA)
P26368 (/HDA)
P26368 (/HDA)
P26368 (/HDA)
(16 more) |
Enzyme binding GO:0019899
Interacting selectively and non-covalently with any enzyme.
|
26 |
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
P26368 (/IPI)
(16 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
5 | Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) |
MRNA binding GO:0003729
Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.
|
5 | Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) |
Poly-pyrimidine tract binding GO:0008187
Interacting selectively and non-covalently with any stretch of pyrimidines (cytosine or uracil) in an RNA molecule.
|
5 | Q24562 (/IDA) Q24562 (/IDA) Q24562 (/IDA) Q24562 (/IDA) Q24562 (/IDA) |
Enzyme binding GO:0019899
Interacting selectively and non-covalently with any enzyme.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
Pre-mRNA 3'-splice site binding GO:0030628
Interacting selectively and non-covalently with the pre-mRNA 3' splice site sequence.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
C2H2 zinc finger domain binding GO:0070742
Interacting selectively and non-covalently with a C2H2-type zinc finger domain of a protein. The C2H2 zinc finger is the classical zinc finger domain, in which two conserved cysteines and histidines co-ordinate a zinc ion.
|
3 | P26369 (/IPI) P26369 (/IPI) P26369 (/IPI) |
There are 32 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
31 |
P26368 (/IC)
P26368 (/IC)
P26368 (/IC)
P26368 (/IC)
P26368 (/IC)
P26368 (/IC)
P26368 (/IC)
P26368 (/IC)
P26368 (/IC)
P26368 (/IC)
(21 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
26 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(16 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
26 |
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
(16 more) |
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
|
26 |
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
(16 more) |
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
|
26 |
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
(16 more) |
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
|
26 |
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
(16 more) |
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
|
26 |
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
(16 more) |
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
|
26 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(16 more) |
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
|
26 |
P26368 (/IMP)
P26368 (/IMP)
P26368 (/IMP)
P26368 (/IMP)
P26368 (/IMP)
P26368 (/IMP)
P26368 (/IMP)
P26368 (/IMP)
P26368 (/IMP)
P26368 (/IMP)
(16 more) |
Positive regulation of RNA splicing GO:0033120
Any process that activates or increases the frequency, rate or extent of RNA splicing.
|
26 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(16 more) |
Negative regulation of mRNA splicing, via spliceosome GO:0048025
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
26 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(16 more) |
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
|
5 | Q24562 (/HMP) Q24562 (/HMP) Q24562 (/HMP) Q24562 (/HMP) Q24562 (/HMP) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
5 | Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
5 | Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) |
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
5 | Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) |
Positive regulation of RNA export from nucleus GO:0046833
Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm.
|
5 | Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) |
Nuclear export GO:0051168
The directed movement of substances out of the nucleus.
|
5 | Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) Q24562 (/IMP) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
RNA splicing GO:0008380
The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
3 | P26369 (/IDA) P26369 (/IDA) P26369 (/IDA) |
Negative regulation of protein ubiquitination GO:0031397
Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of ubiquitin groups to a protein.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
Positive regulation of RNA splicing GO:0033120
Any process that activates or increases the frequency, rate or extent of RNA splicing.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
Positive regulation of RNA splicing GO:0033120
Any process that activates or increases the frequency, rate or extent of RNA splicing.
|
3 | P26369 (/ISS) P26369 (/ISS) P26369 (/ISS) |
Negative regulation of mRNA splicing, via spliceosome GO:0048025
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
Negative regulation of mRNA splicing, via spliceosome GO:0048025
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
3 | P26369 (/ISS) P26369 (/ISS) P26369 (/ISS) |
Nematode larval development GO:0002119
The process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew.
|
2 | P90978 (/IMP) Q8MXS2 (/IMP) |
Germ cell development GO:0007281
The process whose specific outcome is the progression of an immature germ cell over time, from its formation to the mature structure (gamete). A germ cell is any reproductive cell in a multicellular organism.
|
2 | P90978 (/IMP) Q8MXS2 (/IMP) |
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
|
2 | P90978 (/IMP) Q8MXS2 (/IMP) |
Embryonic body morphogenesis GO:0010172
The process in which the anatomical structures of the embryonic soma are generated and organized.
|
2 | P90978 (/IMP) Q8MXS2 (/IMP) |
Developmental growth GO:0048589
The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another.
|
2 | P90978 (/IMP) Q8MXS2 (/IMP) |
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
|
1 | Q8MXS2 (/ISS) |
MRNA 3'-splice site recognition GO:0000389
Recognition of the intron 3'-splice site by components of the assembling U2- or U12-type spliceosome.
|
1 | P90978 (/IMP) |
Regulation of mRNA splicing, via spliceosome GO:0048024
Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism.
|
1 | P90978 (/ISS) |
There are 17 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
U2AF GO:0089701
A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point.
|
31 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(21 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
26 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(16 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
26 |
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
P26368 (/TAS)
(16 more) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
26 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(16 more) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
26 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(16 more) |
U2-type prespliceosome GO:0071004
A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation.
|
26 |
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
P26368 (/IDA)
(16 more) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
7 | P90978 (/ISS) Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) Q24562 (/ISS) Q8MXS2 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
5 | Q24562 (/IC) Q24562 (/IC) Q24562 (/IC) Q24562 (/IC) Q24562 (/IC) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
5 | Q24562 (/HDA) Q24562 (/HDA) Q24562 (/HDA) Q24562 (/HDA) Q24562 (/HDA) |
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
|
5 | Q24562 (/HDA) Q24562 (/HDA) Q24562 (/HDA) Q24562 (/HDA) Q24562 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
3 | P26369 (/TAS) P26369 (/TAS) P26369 (/TAS) |
U2-type prespliceosome GO:0071004
A spliceosomal complex that is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP. The prespliceosome includes many proteins in addition to those found in the U1 and U2 snRNPs. Commitment to a given pair of 5' and 3' splice sites occurs at the time of prespliceosome formation.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
U2AF GO:0089701
A heterodimeric protein complex consisting of conserved large and small U2AF subunits that contributes to spliceosomal RNA splicing by binding to consensus sequences at the 3' splice site. U2AF is required to stabilize the association of the U2 snRNP with the branch point.
|
3 | P26369 (/ISO) P26369 (/ISO) P26369 (/ISO) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | P90978 (/IDA) |