The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 79: Putative splicing factor 45
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 1 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
16 |
Q8JZX4 (/IPI)
Q96I25 (/IPI)
Q96I25 (/IPI)
Q96I25 (/IPI)
Q96I25 (/IPI)
Q96I25 (/IPI)
Q96I25 (/IPI)
Q96I25 (/IPI)
Q96I25 (/IPI)
Q96I25 (/IPI)
(6 more) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
|
15 |
Q96I25 (/IMP)
Q96I25 (/IMP)
Q96I25 (/IMP)
Q96I25 (/IMP)
Q96I25 (/IMP)
Q96I25 (/IMP)
Q96I25 (/IMP)
Q96I25 (/IMP)
Q96I25 (/IMP)
Q96I25 (/IMP)
(5 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
15 |
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
(5 more) |
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
|
4 | Q7PL81 (/IGI) Q7PL82 (/IGI) Q7PL83 (/IGI) Q8SYI1 (/IGI) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
4 | Q7PL81 (/IC) Q7PL82 (/IC) Q7PL83 (/IC) Q8SYI1 (/IC) |
Compound eye morphogenesis GO:0001745
The morphogenetic process in which the anatomical structures of the compound eye are generated and organized. The adult compound eye is a precise assembly of 700-800 ommatidia. Each ommatidium is composed of 20 cells, identified by cell type and position. An example of compound eye morphogenesis is found in Drosophila melanogaster.
|
4 | Q7PL81 (/IGI) Q7PL82 (/IGI) Q7PL83 (/IGI) Q8SYI1 (/IGI) |
DNA repair GO:0006281
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
|
4 | Q7PL81 (/IMP) Q7PL82 (/IMP) Q7PL83 (/IMP) Q8SYI1 (/IMP) |
Regulation of RNA splicing GO:0043484
Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
|
2 | P42698 (/IMP) P42698 (/IMP) |
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
|
1 | Q8JZX4 (/TAS) |
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
|
1 | Q8JZX4 (/ISO) |
Alternative mRNA splicing, via spliceosome GO:0000380
The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition.
|
1 | Q8JZX4 (/ISS) |
There are 8 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
30 |
Q5W009 (/IDA)
Q5W009 (/IDA)
Q5W009 (/IDA)
Q5W009 (/IDA)
Q5W009 (/IDA)
Q5W009 (/IDA)
Q5W009 (/IDA)
Q5W009 (/IDA)
Q5W009 (/IDA)
Q5W009 (/IDA)
(20 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
15 |
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
Q96I25 (/TAS)
(5 more) |
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
|
4 | Q7PL81 (/HDA) Q7PL82 (/HDA) Q7PL83 (/HDA) Q8SYI1 (/HDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | P42698 (/IDA) P42698 (/IDA) Q8JZX4 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | P42698 (/IDA) P42698 (/IDA) |
Chloroplast GO:0009507
A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
|
2 | P42698 (/ISS) P42698 (/ISS) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q8JZX4 (/ISO) |
Protein-containing complex GO:0032991
A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
|
1 | Q8JZX4 (/IDA) |