The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 345: Serine/arginine-rich splicing factor 9
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 4 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
12 |
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
(2 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
11 |
Q13242 (/HDA)
Q13242 (/HDA)
Q13242 (/HDA)
Q13242 (/HDA)
Q13242 (/HDA)
Q13242 (/HDA)
Q13242 (/HDA)
Q13242 (/HDA)
Q13242 (/HDA)
Q13242 (/HDA)
(1 more) |
Protein domain specific binding GO:0019904
Interacting selectively and non-covalently with a specific domain of a protein.
|
11 |
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
Q13242 (/IPI)
(1 more) |
Protein domain specific binding GO:0019904
Interacting selectively and non-covalently with a specific domain of a protein.
|
1 | Q9D0B0 (/ISO) |
There are 11 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
11 |
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
(1 more) |
MRNA splice site selection GO:0006376
Selection of a splice site by components of the assembling spliceosome.
|
11 |
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
(1 more) |
MRNA processing GO:0006397
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
|
11 |
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
(1 more) |
RNA export from nucleus GO:0006405
The directed movement of RNA from the nucleus to the cytoplasm.
|
11 |
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
(1 more) |
MRNA export from nucleus GO:0006406
The directed movement of mRNA from the nucleus to the cytoplasm.
|
11 |
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
(1 more) |
MRNA 3'-end processing GO:0031124
Any process involved in forming the mature 3' end of an mRNA molecule.
|
11 |
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
(1 more) |
Negative regulation of mRNA splicing, via spliceosome GO:0048025
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
11 |
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
(1 more) |
Negative regulation of mRNA splicing, via spliceosome GO:0048025
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
2 | Q5PPI1 (/ISS) Q9D0B0 (/ISS) |
Response to toxic substance GO:0009636
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus.
|
1 | Q5PPI1 (/IEP) |
Response to alkaloid GO:0043279
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active.
|
1 | Q5PPI1 (/IEP) |
Negative regulation of mRNA splicing, via spliceosome GO:0048025
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
1 | Q9D0B0 (/ISO) |
There are 5 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
11 |
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
(1 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
11 |
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
Q13242 (/TAS)
(1 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
11 |
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
Q13242 (/IDA)
(1 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
1 | Q9D0B0 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | Q9D0B0 (/ISO) |