The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 312: RNA-binding protein 3 isoform X1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 5 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
16 |
P98179 (/IPI)
P98179 (/IPI)
P98179 (/IPI)
P98179 (/IPI)
P98179 (/IPI)
P98179 (/IPI)
P98179 (/IPI)
P98179 (/IPI)
P98179 (/IPI)
P98179 (/IPI)
(6 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
15 |
P98179 (/HDA)
P98179 (/HDA)
P98179 (/HDA)
P98179 (/HDA)
P98179 (/HDA)
P98179 (/HDA)
P98179 (/HDA)
P98179 (/HDA)
P98179 (/HDA)
P98179 (/HDA)
(5 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
15 |
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
(5 more) |
Ribosomal large subunit binding GO:0043023
Interacting selectively and non-covalently with any part of the larger ribosomal subunit.
|
2 | O89086 (/IPI) O89086 (/IPI) |
Ribosomal large subunit binding GO:0043023
Interacting selectively and non-covalently with any part of the larger ribosomal subunit.
|
1 | W8E7I1 (/ISS) |
There are 12 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
18 |
O89086 (/ISS)
O89086 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
(8 more) |
Regulation of translation GO:0006417
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
17 |
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
(7 more) |
RNA processing GO:0006396
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
|
15 |
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
P98179 (/TAS)
(5 more) |
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
|
2 | O89086 (/IDA) O89086 (/IDA) |
Regulation of translation GO:0006417
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
2 | O89086 (/IDA) O89086 (/IDA) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
2 | O89086 (/IDA) O89086 (/IDA) |
Production of miRNAs involved in gene silencing by miRNA GO:0035196
Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein, or by increasing the degradation of non-protein-coding RNA transcripts.
|
2 | O89086 (/IDA) O89086 (/IDA) |
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
2 | O89086 (/ISO) O89086 (/ISO) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
1 | W8E7I1 (/ISS) |
Cold acclimation GO:0009631
Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures.
|
1 | W8E7I1 (/IEP) |
Positive regulation of translation GO:0045727
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
|
1 | Q925G0 (/IDA) |
Cellular response to cold GO:0070417
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
1 | W8E7I1 (/IEP) |
There are 13 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
30 |
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
(20 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
30 |
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
A0A024QYX3 (/IDA)
(20 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
18 |
O89086 (/ISS)
O89086 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
(8 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
18 |
O89086 (/ISS)
O89086 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
(8 more) |
Dendrite GO:0030425
A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
|
18 |
O89086 (/ISS)
O89086 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
P98179 (/ISS)
(8 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
2 | O89086 (/ISO) O89086 (/ISO) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
2 | O89086 (/ISO) O89086 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
2 | O89086 (/ISO) O89086 (/ISO) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | O89086 (/ISO) O89086 (/ISO) |
Dendrite GO:0030425
A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
|
2 | O89086 (/ISO) O89086 (/ISO) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q925G0 (/IDA) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q925G0 (/IDA) |
Dendrite GO:0030425
A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
|
1 | Q925G0 (/IDA) |