The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 249: Pre-mRNA-splicing factor CWC2, variant

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 3 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
U6 snRNA binding GO:0017070
Interacting selectively and non-covalently with the U6 small nuclear RNA (U6 snRNA).
16 P0CR14 (/ISS) P0CR14 (/ISS) P0CR15 (/ISS) P0CR15 (/ISS) P87126 (/ISS) Q4WU07 (/ISS) Q4WU07 (/ISS) Q51TF7 (/ISS) Q51TF7 (/ISS) Q59W50 (/ISS)
(6 more)
Pre-mRNA binding GO:0036002
Interacting selectively and non-covalently with pre-messenger RNA (pre-mRNA), an intermediate molecule between DNA and protein that may contain introns and, at least in part, encodes one or more proteins. Introns are removed from pre-mRNA to form a mRNA molecule.
16 P0CR14 (/ISS) P0CR14 (/ISS) P0CR15 (/ISS) P0CR15 (/ISS) P87126 (/ISS) Q4WU07 (/ISS) Q4WU07 (/ISS) Q51TF7 (/ISS) Q51TF7 (/ISS) Q59W50 (/ISS)
(6 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
1 P87126 (/IPI)

There are 5 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
16 P0CR14 (/ISS) P0CR14 (/ISS) P0CR15 (/ISS) P0CR15 (/ISS) P87126 (/ISS) Q4WU07 (/ISS) Q4WU07 (/ISS) Q51TF7 (/ISS) Q51TF7 (/ISS) Q59W50 (/ISS)
(6 more)
MRNA cis splicing, via spliceosome GO:0045292
The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
16 P0CR14 (/ISS) P0CR14 (/ISS) P0CR15 (/ISS) P0CR15 (/ISS) P87126 (/ISS) Q4WU07 (/ISS) Q4WU07 (/ISS) Q51TF7 (/ISS) Q51TF7 (/ISS) Q59W50 (/ISS)
(6 more)
Positive regulation of RNA splicing GO:0033120
Any process that activates or increases the frequency, rate or extent of RNA splicing.
15 P0CR14 (/ISS) P0CR14 (/ISS) P0CR15 (/ISS) P0CR15 (/ISS) Q4WU07 (/ISS) Q4WU07 (/ISS) Q51TF7 (/ISS) Q51TF7 (/ISS) Q59W50 (/ISS) Q59W50 (/ISS)
(5 more)
Positive regulation of cell cycle GO:0045787
Any process that activates or increases the rate or extent of progression through the cell cycle.
15 P0CR14 (/ISS) P0CR14 (/ISS) P0CR15 (/ISS) P0CR15 (/ISS) Q4WU07 (/ISS) Q4WU07 (/ISS) Q51TF7 (/ISS) Q51TF7 (/ISS) Q59W50 (/ISS) Q59W50 (/ISS)
(5 more)
MRNA cis splicing, via spliceosome GO:0045292
The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript.
1 P87126 (/IMP)

There are 5 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Prp19 complex GO:0000974
A protein complex consisting of Prp19 and associated proteins that is involved in the transition from the precatalytic spliceosome to the activated form that catalyzes step 1 of splicing, and which remains associated with the spliceosome through the second catalytic step. It is widely conserved, found in both yeast and mammals, though the exact composition varies. In S. cerevisiae, it contains Prp19p, Ntc20p, Snt309p, Isy1p, Syf2p, Cwc2p, Prp46p, Clf1p, Cef1p, and Syf1p.
16 P0CR14 (/ISS) P0CR14 (/ISS) P0CR15 (/ISS) P0CR15 (/ISS) P87126 (/ISS) Q4WU07 (/ISS) Q4WU07 (/ISS) Q51TF7 (/ISS) Q51TF7 (/ISS) Q59W50 (/ISS)
(6 more)
Prp19 complex GO:0000974
A protein complex consisting of Prp19 and associated proteins that is involved in the transition from the precatalytic spliceosome to the activated form that catalyzes step 1 of splicing, and which remains associated with the spliceosome through the second catalytic step. It is widely conserved, found in both yeast and mammals, though the exact composition varies. In S. cerevisiae, it contains Prp19p, Ntc20p, Snt309p, Isy1p, Syf2p, Cwc2p, Prp46p, Clf1p, Cef1p, and Syf1p.
1 P87126 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 P87126 (/HDA)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
1 P87126 (/IDA)
Post-mRNA release spliceosomal complex GO:0071014
A spliceosomal complex that is formed following the release of the spliced product from the post-spliceosomal complex and contains the excised intron and three snRNPs, including U5.
1 P87126 (/IDA)
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