The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 155: serine/arginine-rich splicing factor 10 isoform X1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
62 |
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
(52 more) |
Unfolded protein binding GO:0051082
Interacting selectively and non-covalently with an unfolded protein.
|
62 |
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
(52 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
31 |
O75494 (/HDA)
O75494 (/HDA)
O75494 (/HDA)
O75494 (/HDA)
O75494 (/HDA)
O75494 (/HDA)
O75494 (/HDA)
O75494 (/HDA)
O75494 (/HDA)
O75494 (/HDA)
(21 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
31 |
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
(21 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
31 |
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
(21 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
31 |
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
(21 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
31 |
O75494 (/IPI)
O75494 (/IPI)
O75494 (/IPI)
O75494 (/IPI)
O75494 (/IPI)
O75494 (/IPI)
O75494 (/IPI)
O75494 (/IPI)
O75494 (/IPI)
O75494 (/IPI)
(21 more) |
RS domain binding GO:0050733
Interacting selectively and non-covalently with an RS domain of a protein; RS domains are usually highly phosphorylated and characterized by the presence of arginine (R)/serine (S) dipeptides. The RS domain promotes protein-protein interactions and directs subcellular localization and, in certain situations, nucleocytoplasmic shuttling of individual SR proteins. They also play a role in splicing.
|
31 |
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
(21 more) |
There are 15 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
|
62 |
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
(52 more) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
62 |
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
(52 more) |
Negative regulation of mRNA splicing, via spliceosome GO:0048025
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
62 |
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
(52 more) |
MRNA splice site selection GO:0006376
Selection of a splice site by components of the assembling spliceosome.
|
32 |
Q7ZTJ8 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
(22 more) |
Spliceosomal tri-snRNP complex assembly GO:0000244
The formation of a tri-snRNP complex containing U4 and U6 (or U4atac and U6atac) snRNAs and U5 snRNAs and associated proteins. This includes reannealing of U4 and U6 (or U4atac and U6atac) snRNAs released from previous rounds of splicing to reform the U4/U6 snRNP (or U4atac/U6atac snRNP) as well as the subsequent association of the U5 snRNP with the U4/U6 snRNP (or U4atac/U6atac snRNP) to form a tri-snRNP that is ready to reassemble into another spliceosome complex.
|
31 |
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
(21 more) |
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
|
31 |
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
(21 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
31 |
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
(21 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
31 |
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
(21 more) |
MRNA splice site selection GO:0006376
Selection of a splice site by components of the assembling spliceosome.
|
31 |
Q9R0U0 (/IC)
Q9R0U0 (/IC)
Q9R0U0 (/IC)
Q9R0U0 (/IC)
Q9R0U0 (/IC)
Q9R0U0 (/IC)
Q9R0U0 (/IC)
Q9R0U0 (/IC)
Q9R0U0 (/IC)
Q9R0U0 (/IC)
(21 more) |
MRNA splice site selection GO:0006376
Selection of a splice site by components of the assembling spliceosome.
|
31 |
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
(21 more) |
MRNA splice site selection GO:0006376
Selection of a splice site by components of the assembling spliceosome.
|
31 |
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
(21 more) |
Cytosolic transport GO:0016482
The directed movement of substances or organelles within the cytosol.
|
31 |
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
Q9R0U0 (/IDA)
(21 more) |
Regulation of mRNA splicing, via spliceosome GO:0048024
Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism.
|
31 |
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
(21 more) |
Regulation of mRNA splicing, via spliceosome GO:0048024
Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism.
|
31 |
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
(21 more) |
Negative regulation of mRNA splicing, via spliceosome GO:0048025
Any process that stops, prevents or reduces the rate or extent of mRNA splicing via a spliceosomal mechanism.
|
31 |
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
(21 more) |
There are 10 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
93 |
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
A0A0S2Z504 (/IDA)
(83 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
31 |
O75494 (/IC)
O75494 (/IC)
O75494 (/IC)
O75494 (/IC)
O75494 (/IC)
O75494 (/IC)
O75494 (/IC)
O75494 (/IC)
O75494 (/IC)
O75494 (/IC)
(21 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
31 |
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
(21 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
31 |
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
O75494 (/NAS)
(21 more) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
31 |
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
O75494 (/IDA)
(21 more) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
31 |
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
Q9R0U0 (/ISO)
(21 more) |
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
31 |
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
Q9R0U0 (/ISS)
(21 more) |
Dendrite GO:0030425
A neuron projection that has a short, tapering, morphology. Dendrites receive and integrate signals from other neurons or from sensory stimuli, and conduct nerve impulses towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
|
1 | Q4KM38 (/IDA) |
Neuronal cell body GO:0043025
The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
|
1 | Q4KM38 (/IDA) |
Axon terminus GO:0043679
Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal button is a specialized region of it.
|
1 | Q4KM38 (/IDA) |