The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
« Back to all FunFams

FunFam 4: Trafficking protein particle complex 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 1 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
3 Q5NCF2 (/IPI) Q5NCF2 (/IPI) Q5NCF2 (/IPI)

There are 4 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Neutrophil degranulation GO:0043312
The regulated exocytosis of secretory granules containing preformed mediators such as proteases, lipases, and inflammatory mediators by a neutrophil.
46 Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS)
(36 more)
COPII vesicle coating GO:0048208
The addition of COPII proteins and adaptor proteins to ER membranes during the formation of transport vesicles, forming a vesicle coat.
46 Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS)
(36 more)
Endoplasmic reticulum to Golgi vesicle-mediated transport GO:0006888
The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
3 Q9VA95 (/ISS) Q9VA95 (/ISS) Q9VA95 (/ISS)
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
3 Q9VA95 (/ISS) Q9VA95 (/ISS) Q9VA95 (/ISS)

There are 5 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Extracellular region GO:0005576
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
46 Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS)
(36 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
46 Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS)
(36 more)
Azurophil granule lumen GO:0035578
The volume enclosed by the membrane of an azurophil granule, a primary lysosomal granule found in neutrophil granulocytes that contains a wide range of hydrolytic enzymes and is released into the extracellular fluid.
46 Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS) Q9Y5R8 (/TAS)
(36 more)
TRAPP complex GO:0030008
A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active.
3 Q5NCF2 (/IDA) Q5NCF2 (/IDA) Q5NCF2 (/IDA)
TRAPP complex GO:0030008
A large complex that acts as a tethering factor involved in transporting vesicles from the ER through the Golgi to the plasma membrane. A TRAPP (transport protein particle) complex has a core set of proteins which are joined by specific subunits depending on the cellular component where a given TRAPP complex is active.
3 Q9VA95 (/ISS) Q9VA95 (/ISS) Q9VA95 (/ISS)
CATH-Gene3D is a Global Biodata Core Resource Learn more...