The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"TATA-Binding Protein
".
FunFam 5: TATA box-binding protein-like 1
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 20 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
94 |
P62340 (/IPI)
P62340 (/IPI)
P62340 (/IPI)
P62340 (/IPI)
P62340 (/IPI)
P62340 (/IPI)
P62340 (/IPI)
P62340 (/IPI)
P62340 (/IPI)
P62340 (/IPI)
(84 more) |
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
48 |
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
(38 more) |
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
47 |
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
(37 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
47 |
P62380 (/ISA)
P62380 (/ISA)
P62380 (/ISA)
P62380 (/ISA)
P62380 (/ISA)
P62380 (/ISA)
P62380 (/ISA)
P62380 (/ISA)
P62380 (/ISA)
P62380 (/ISA)
(37 more) |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
47 |
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
(37 more) |
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
47 |
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
(37 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
47 |
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
(37 more) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
11 |
A7UFC2 (/IDA)
A7UFC2 (/IDA)
A7UFC2 (/IDA)
A7UFC2 (/IDA)
A7UFC2 (/IDA)
A7UFC2 (/IDA)
P52653 (/IDA)
P52653 (/IDA)
P52653 (/IDA)
P52653 (/IDA)
(1 more) |
RNA polymerase II core promoter sequence-specific DNA binding GO:0000979
Interacting selectively and non-covalently with a DNA sequence that is part of the core promoter of a RNA polymerase II-transcribed gene.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
Core promoter binding GO:0001047
Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for the basal transcription machinery. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
5 | M9PHD8 (/TAS) Q07DP5 (/TAS) Q7KA83 (/TAS) Q8T052 (/TAS) Q9XZD9 (/TAS) |
RNA polymerase II general transcription initiation factor activity GO:0016251
An activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase II. The general transcription factors for RNA polymerase II include TFIIB, TFIID, TFIIE, TFIIF, TFIIH and TATA-binding protein (TBP).
|
5 | M9PHD8 (/IC) Q07DP5 (/IC) Q7KA83 (/IC) Q8T052 (/IC) Q9XZD9 (/IC) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
3 | C4M7H7 (/ISS) C4M7H7 (/ISS) C4M7H7 (/ISS) |
RNA polymerase III type 2 promoter sequence-specific DNA binding GO:0001003
Interacting selectively and non-covalently with a sequence of DNA that is a part of a type 2 promoter that controls transcription by RNA polymerase III. Type 2 promoters consist of an A box and a B box downstream of the transcription start site within the sequence within the sequence of the mature RNA. Type 2 promoters are found in many tRNA genes as well as in other small RNAs.
|
1 | Q27896 (/IDA) |
TFIIA-class transcription factor complex binding GO:0001092
Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIA complex, one of the complexes involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.
|
1 | Q27896 (/IDA) |
TFIIA-class transcription factor complex binding GO:0001092
Interacting selectively and non-covalently with a general RNA polymerase II transcription factor belonging to the TFIIA complex, one of the complexes involved in formation of the preinitiation complex (PIC) by RNA polymerase II and defined as a basal or general transcription factor.
|
1 | Q07DP5 (/IPI) |
TFIIB-class transcription factor binding GO:0001093
Interacting selectively and non-covalently with a general RNA polymerase II transcription factor of the TFIIB class, one of the factors involved in formation of the preinitiation complex (PIC) by RNA polymerase II.
|
1 | Q27896 (/IPI) |
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
|
1 | Q27896 (/IPI) |
There are 29 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
53 |
M9PHD8 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
P62380 (/IDA)
(43 more) |
Acrosome assembly GO:0001675
The formation of the acrosome from the spermatid Golgi.
|
47 |
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
(37 more) |
DTTP biosynthetic process GO:0006235
The chemical reactions and pathways resulting in the formation of dTTP, deoxyribosylthymine triphosphate.
|
47 |
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
(37 more) |
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
47 |
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
P62380 (/TAS)
(37 more) |
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
47 |
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
(37 more) |
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
47 |
P62340 (/TAS)
P62340 (/TAS)
P62340 (/TAS)
P62340 (/TAS)
P62340 (/TAS)
P62340 (/TAS)
P62340 (/TAS)
P62340 (/TAS)
P62340 (/TAS)
P62340 (/TAS)
(37 more) |
Spermatid nucleus differentiation GO:0007289
The specialization of the spermatid nucleus during the development of a spermatid into a mature male gamete competent for fertilization.
|
47 |
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
P62340 (/IMP)
(37 more) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
47 |
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
P62340 (/ISO)
(37 more) |
Positive regulation of transcription initiation from RNA polymerase II promoter GO:0060261
Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.
|
10 | A7UFC2 (/IDA) A7UFC2 (/IDA) A7UFC2 (/IDA) A7UFC2 (/IDA) A7UFC2 (/IDA) A7UFC2 (/IDA) P52653 (/IDA) P52653 (/IDA) P52653 (/IDA) P52653 (/IDA) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
5 | M9PHD8 (/IMP) Q07DP5 (/IMP) Q7KA83 (/IMP) Q8T052 (/IMP) Q9XZD9 (/IMP) |
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
5 | C4M7H7 (/ISS) C4M7H7 (/ISS) C4M7H7 (/ISS) Q27896 (/ISS) Q6DIY4 (/ISS) |
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
5 | M9PHD8 (/TAS) Q07DP5 (/TAS) Q7KA83 (/TAS) Q8T052 (/TAS) Q9XZD9 (/TAS) |
Salivary gland cell autophagic cell death GO:0035071
The stage-specific programmed cell death of salivary gland cells during salivary gland histolysis.
|
5 | M9PHD8 (/IMP) Q07DP5 (/IMP) Q7KA83 (/IMP) Q8T052 (/IMP) Q9XZD9 (/IMP) |
Response to ecdysone GO:0035075
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ecdysone stimulus.
|
5 | M9PHD8 (/IMP) Q07DP5 (/IMP) Q7KA83 (/IMP) Q8T052 (/IMP) Q9XZD9 (/IMP) |
Pupal development GO:0035209
The process whose specific outcome is the progression of the pupa over time, from its formation to the mature structure. The pupa is a dormant life stage interposed between the larval and the adult stages in insects that undergo a complete metamorphosis.
|
5 | M9PHD8 (/IMP) Q07DP5 (/IMP) Q7KA83 (/IMP) Q8T052 (/IMP) Q9XZD9 (/IMP) |
Spiracle morphogenesis, open tracheal system GO:0035277
The process in which the anatomical structures of a spiracle are generated and organized. Spiracles are the openings in the insect open tracheal system; externally they connect to the epidermis and internally they connect to the tracheal trunk.
|
5 | M9PHD8 (/IMP) Q07DP5 (/IMP) Q7KA83 (/IMP) Q8T052 (/IMP) Q9XZD9 (/IMP) |
Positive regulation of ribosomal protein gene transcription by RNA polymerase II GO:0060963
Any process that increases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes mediated by RNA polymerase II.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
Positive regulation of ribosomal protein gene transcription by RNA polymerase II GO:0060963
Any process that increases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes mediated by RNA polymerase II.
|
5 | M9PHD8 (/IMP) Q07DP5 (/IMP) Q7KA83 (/IMP) Q8T052 (/IMP) Q9XZD9 (/IMP) |
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
4 | P52653 (/IDA) P52653 (/IDA) P52653 (/IDA) P52653 (/IDA) |
Transcription by RNA polymerase II GO:0006366
The synthesis of RNA from a DNA template by RNA polymerase II (RNAP II), originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
|
3 | Q5U385 (/IMP) Q9W6Z2 (/IMP) Q9W6Z2 (/IMP) |
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
|
3 | Q5U385 (/IMP) Q9W6Z2 (/IMP) Q9W6Z2 (/IMP) |
Positive regulation of transcription initiation from RNA polymerase II promoter GO:0060261
Any process that increases the rate, frequency or extent of a process involved in starting transcription from an RNA polymerase II promoter.
|
3 | C4M7H7 (/ISS) C4M7H7 (/ISS) C4M7H7 (/ISS) |
Embryo development ending in birth or egg hatching GO:0009792
The process whose specific outcome is the progression of an embryo over time, from zygote formation until the end of the embryonic life stage. The end of the embryonic life stage is organism-specific and may be somewhat arbitrary; for mammals it is usually considered to be birth, for insects the hatching of the first instar larva from the eggshell.
|
2 | Q27896 (/ISS) Q6DIY4 (/ISS) |
Transcription initiation from RNA polymerase II promoter GO:0006367
Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
1 | Q27896 (/IDA) |
Transcription by RNA polymerase III GO:0006383
The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.
|
1 | Q27896 (/IDA) |
Transcription initiation from RNA polymerase III promoter GO:0006384
Any process involved in the assembly of the RNA polymerase III preinitiation complex (PIC) at an RNA polymerase III promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
|
1 | Q27896 (/IEP) |
TRNA transcription by RNA polymerase III GO:0042797
The synthesis of transfer RNA (tRNA) from a DNA template by RNA polymerase III (Pol III), originating at a Pol III promoter.
|
1 | Q27896 (/IDA) |
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
1 | Q07DP5 (/IMP) |
There are 13 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
53 |
M9PHD8 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
(43 more) |
Transcription factor TFIIA complex GO:0005672
A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12).
|
47 |
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
(37 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
47 |
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
P62340 (/IDA)
(37 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
7 | C4M7H7 (/ISS) C4M7H7 (/ISS) C4M7H7 (/ISS) Q5U385 (/ISS) Q6DIY4 (/ISS) Q9W6Z2 (/ISS) Q9W6Z2 (/ISS) |
Transcription factor TFIID complex GO:0005669
A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.
|
6 | M9PHD8 (/ISS) Q07DP5 (/ISS) Q27896 (/ISS) Q7KA83 (/ISS) Q8T052 (/ISS) Q9XZD9 (/ISS) |
Transcription factor TFIID complex GO:0005669
A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.
|
6 | A7UFC2 (/NAS) A7UFC2 (/NAS) A7UFC2 (/NAS) A7UFC2 (/NAS) A7UFC2 (/NAS) A7UFC2 (/NAS) |
Polytene chromosome GO:0005700
A type of chromosome in a polyploid cell, formed when multiple copies of homologous chromosomes are aligned side by side to give a giant chromosome in which distinct chromosome bands are readily visible.
|
6 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q27896 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
Male germ cell nucleus GO:0001673
The nucleus of a male germ cell, a reproductive cell in males.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
Female germ cell nucleus GO:0001674
The nucleus of the female germ cell, a reproductive cell in females.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
Transcription factor complex GO:0005667
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
|
5 | M9PHD8 (/IDA) Q07DP5 (/IDA) Q7KA83 (/IDA) Q8T052 (/IDA) Q9XZD9 (/IDA) |
Transcription factor TFIID complex GO:0005669
A complex composed of TATA binding protein (TBP) and TBP associated factors (TAFs); the total mass is typically about 800 kDa. Most of the TAFs are conserved across species. In TATA-containing promoters for RNA polymerase II (Pol II), TFIID is believed to recognize at least two distinct elements, the TATA element and a downstream promoter element. TFIID is also involved in recognition of TATA-less Pol II promoters. Binding of TFIID to DNA is necessary but not sufficient for transcription initiation from most RNA polymerase II promoters.
|
4 | P52653 (/IC) P52653 (/IC) P52653 (/IC) P52653 (/IC) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
4 | Q5U385 (/ISS) Q6DIY4 (/ISS) Q9W6Z2 (/ISS) Q9W6Z2 (/ISS) |
Transcription factor complex GO:0005667
A protein complex that is capable of associating with DNA by direct binding, or via other DNA-binding proteins or complexes, and regulating transcription.
|
1 | Q27896 (/IPI) |