The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Classic Zinc Finger
".
FunFam 59: U1 small nuclear ribonucleoprotein C
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 7 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
102 |
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
(92 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
51 |
P09234 (/HDA)
P09234 (/HDA)
P09234 (/HDA)
P09234 (/HDA)
P09234 (/HDA)
P09234 (/HDA)
P09234 (/HDA)
P09234 (/HDA)
P09234 (/HDA)
P09234 (/HDA)
(41 more) |
Single-stranded RNA binding GO:0003727
Interacting selectively and non-covalently with single-stranded RNA.
|
51 |
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
(41 more) |
Zinc ion binding GO:0008270
Interacting selectively and non-covalently with zinc (Zn) ions.
|
51 |
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
(41 more) |
Protein homodimerization activity GO:0042803
Interacting selectively and non-covalently with an identical protein to form a homodimer.
|
51 |
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
P09234 (/IPI)
(41 more) |
U1 snRNP binding GO:1990446
Interacting selectively and non-covalently with any part of a U1 small nuclear ribonucleoprotein particle.
|
4 | D3ZCL3 (/IDA) D3ZCL3 (/IDA) D3ZCL3 (/IDA) D3ZCL3 (/IDA) |
U1 snRNP binding GO:1990446
Interacting selectively and non-covalently with any part of a U1 small nuclear ribonucleoprotein particle.
|
4 | Q62241 (/ISO) Q62241 (/ISO) Q62241 (/ISO) Q62241 (/ISO) |
There are 6 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Spliceosomal snRNP assembly GO:0000387
The aggregation, arrangement and bonding together of one or more snRNA and multiple protein components to form a ribonucleoprotein complex that is involved in formation of the spliceosome.
|
51 |
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
(41 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
51 |
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
(41 more) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
51 |
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
(41 more) |
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
|
7 | Q8JGS0 (/IMP) Q8JGS0 (/IMP) Q9VE17 (/IMP) Q9VE17 (/IMP) Q9VE17 (/IMP) Q9VE17 (/IMP) Q9VE17 (/IMP) |
Regulation of alternative mRNA splicing, via spliceosome GO:0000381
Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.
|
5 | Q9VE17 (/HMP) Q9VE17 (/HMP) Q9VE17 (/HMP) Q9VE17 (/HMP) Q9VE17 (/HMP) |
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
|
5 | Q9VE17 (/ISS) Q9VE17 (/ISS) Q9VE17 (/ISS) Q9VE17 (/ISS) Q9VE17 (/ISS) |
There are 10 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
|
173 |
B0JYS7 (/ISS)
D3ZCL3 (/ISS)
D3ZCL3 (/ISS)
D3ZCL3 (/ISS)
D3ZCL3 (/ISS)
E1C6F0 (/ISS)
E2RGI3 (/ISS)
E2RGI3 (/ISS)
E2RGI3 (/ISS)
E2RGI3 (/ISS)
(163 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
103 |
A0A0A0MRR7 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
(93 more) |
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
|
55 |
D3ZCL3 (/IDA)
D3ZCL3 (/IDA)
D3ZCL3 (/IDA)
D3ZCL3 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
(45 more) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
51 |
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
P09234 (/TAS)
(41 more) |
Cajal body GO:0015030
A class of nuclear body, first seen after silver staining by Ramon y Cajal in 1903, enriched in small nuclear ribonucleoproteins, and certain general RNA polymerase II transcription factors; ultrastructurally, they appear as a tangle of coiled, electron-dense threads roughly 0.5 micrometers in diameter; involved in aspects of snRNP biogenesis; the protein coilin serves as a marker for Cajal bodies. Some argue that Cajal bodies are the sites for preassembly of transcriptosomes, unitary particles involved in transcription and processing of RNA.
|
51 |
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
P09234 (/IDA)
(41 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
9 | D3ZCL3 (/IDA) D3ZCL3 (/IDA) D3ZCL3 (/IDA) D3ZCL3 (/IDA) Q9VE17 (/IDA) Q9VE17 (/IDA) Q9VE17 (/IDA) Q9VE17 (/IDA) Q9VE17 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
5 | Q9VE17 (/IC) Q9VE17 (/IC) Q9VE17 (/IC) Q9VE17 (/IC) Q9VE17 (/IC) |
Small nuclear ribonucleoprotein complex GO:0030532
A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
|
5 | Q9VE17 (/IDA) Q9VE17 (/IDA) Q9VE17 (/IDA) Q9VE17 (/IDA) Q9VE17 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | Q62241 (/ISO) Q62241 (/ISO) Q62241 (/ISO) Q62241 (/ISO) |
U1 snRNP GO:0005685
A ribonucleoprotein complex that contains small nuclear RNA U1.
|
4 | Q62241 (/ISO) Q62241 (/ISO) Q62241 (/ISO) Q62241 (/ISO) |