The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Classic Zinc Finger
".
FunFam 554: protein indeterminate-domain 12-like
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 9 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
9 | Q8GYC1 (/ISS) Q8RWX7 (/ISS) Q8RWX7 (/ISS) Q9C9X7 (/ISS) Q9C9X7 (/ISS) Q9FRH4 (/ISS) Q9LRW7 (/ISS) Q9SCQ6 (/ISS) Q9ZUL3 (/ISS) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
7 | Q8GYC1 (/IDA) Q8RWX7 (/IDA) Q8RWX7 (/IDA) Q9C9X7 (/IDA) Q9C9X7 (/IDA) Q9FRH4 (/IDA) Q9ZUL3 (/IDA) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
5 | Q8GYC1 (/IPI) Q9C9X7 (/IPI) Q9C9X7 (/IPI) Q9SCQ6 (/IPI) Q9ZUL3 (/IPI) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
2 | Q8GYC1 (/IDA) Q9ZUL3 (/IDA) |
|
Protein self-association GO:0043621
Interacting selectively and non-covalently with a domain within the same polypeptide.
|
2 | Q9C9X7 (/IPI) Q9C9X7 (/IPI) |
|
Transcription regulatory region DNA binding GO:0044212
Interacting selectively and non-covalently with a DNA region that regulates the transcription of a region of DNA, which may be a gene, cistron, or operon. Binding may occur as a sequence specific interaction or as an interaction observed only once a factor has been recruited to the DNA by other factors.
|
2 | Q9C9X7 (/IDA) Q9C9X7 (/IDA) |
|
Protein heterodimerization activity GO:0046982
Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
|
2 | Q9C9X7 (/IPI) Q9C9X7 (/IPI) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
1 | Q8GYC1 (/IMP) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
1 | Q9FRH4 (/IPI) |
There are 14 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
6 | Q9C9X7 (/TAS) Q9C9X7 (/TAS) Q9FRH4 (/TAS) Q9LRW7 (/TAS) Q9SCQ6 (/TAS) Q9ZUL3 (/TAS) |
|
Asymmetric cell division GO:0008356
The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity.
|
3 | Q8GYC1 (/IMP) Q8RWX7 (/IMP) Q8RWX7 (/IMP) |
|
Gravitropism GO:0009630
The orientation of plant parts under the stimulation of gravity.
|
3 | Q9C9X7 (/IGI) Q9C9X7 (/IGI) Q9FRH4 (/IGI) |
|
Leaf morphogenesis GO:0009965
The process in which the anatomical structures of the leaf are generated and organized.
|
3 | Q9C9X7 (/IGI) Q9C9X7 (/IGI) Q9FRH4 (/IGI) |
|
Positive regulation of auxin biosynthetic process GO:0010601
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth.
|
3 | Q9C9X7 (/IGI) Q9C9X7 (/IGI) Q9FRH4 (/IGI) |
|
Floral organ morphogenesis GO:0048444
The process in which the anatomical structures of the floral organ are generated and organized.
|
3 | Q9C9X7 (/IGI) Q9C9X7 (/IGI) Q9FRH4 (/IGI) |
|
Regulation of auxin polar transport GO:2000012
Any process that modulates the frequency, rate or extent of auxin polar transport.
|
3 | Q9C9X7 (/IGI) Q9C9X7 (/IGI) Q9FRH4 (/IGI) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
2 | Q8GYC1 (/IDA) Q9ZUL3 (/IDA) |
|
Root development GO:0048364
The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
|
2 | Q8RWX7 (/IGI) Q8RWX7 (/IGI) |
|
Regulation of starch metabolic process GO:2000904
Any process that modulates the frequency, rate or extent of starch metabolic process.
|
2 | Q9C9X7 (/IMP) Q9C9X7 (/IMP) |
|
Regulation of gibberellic acid mediated signaling pathway GO:0009937
Any process that modulates the frequency, rate or extent of gibberellic acid mediated signaling.
|
1 | Q9SCQ6 (/IMP) |
|
Gibberellic acid homeostasis GO:0010336
Any biological process involved in the maintenance of an internal steady state of gibberellic acid; may involve transport, biosynthesis, catabolism or conjugation.
|
1 | Q9SCQ6 (/IDA) |
|
Root development GO:0048364
The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
|
1 | Q8GYC1 (/IMP) |
|
Negative regulation of stomatal complex development GO:2000122
Any process that stops, prevents, or reduces the frequency, rate or extent of stomatal complex development.
|
1 | Q9FRH4 (/IMP) |
There are 1 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | Q8GYC1 (/IDA) Q8RWX7 (/IDA) Q8RWX7 (/IDA) Q9C9X7 (/IDA) Q9C9X7 (/IDA) Q9SCQ6 (/IDA) |
