The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Classic Zinc Finger
".
FunFam 513: POZ-, AT hook-, and zinc finger-containing protein...
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
6 | Q9HBE1 (/ISA) Q9HBE1 (/ISA) Q9HBE1 (/ISA) Q9HBE1 (/ISA) Q9HBE1 (/ISA) Q9HBE1 (/ISA) |
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
6 | Q9HBE1 (/ISM) Q9HBE1 (/ISM) Q9HBE1 (/ISM) Q9HBE1 (/ISM) Q9HBE1 (/ISM) Q9HBE1 (/ISM) |
|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
6 | Q9HBE1 (/NAS) Q9HBE1 (/NAS) Q9HBE1 (/NAS) Q9HBE1 (/NAS) Q9HBE1 (/NAS) Q9HBE1 (/NAS) |
|
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
4 | Q5NBY9 (/IDA) Q78I23 (/IDA) Q80XS2 (/IDA) Q9JMG9 (/IDA) |
|
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
4 | Q5NBY9 (/IDA) Q78I23 (/IDA) Q80XS2 (/IDA) Q9JMG9 (/IDA) |
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
4 | Q5NBY9 (/IPI) Q78I23 (/IPI) Q80XS2 (/IPI) Q9JMG9 (/IPI) |
|
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
1 | Q9JMG9 (/IDA) |
|
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
1 | Q9JMG9 (/IDA) |
There are 11 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
6 | Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) |
|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
6 | Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) |
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
4 | Q5NBY9 (/IPI) Q78I23 (/IPI) Q80XS2 (/IPI) Q9JMG9 (/IPI) |
|
Spermatogenesis GO:0007283
The process of formation of spermatozoa, including spermatocytogenesis and spermiogenesis.
|
4 | Q5NBY9 (/IMP) Q78I23 (/IMP) Q80XS2 (/IMP) Q9JMG9 (/IMP) |
|
Male gonad development GO:0008584
The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure.
|
4 | Q5NBY9 (/IMP) Q78I23 (/IMP) Q80XS2 (/IMP) Q9JMG9 (/IMP) |
|
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
4 | Q5NBY9 (/IDA) Q78I23 (/IDA) Q80XS2 (/IDA) Q9JMG9 (/IDA) |
|
T cell differentiation GO:0030217
The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.
|
4 | Q5NBY9 (/IDA) Q78I23 (/IDA) Q80XS2 (/IDA) Q9JMG9 (/IDA) |
|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
4 | Q5NBY9 (/ISS) Q78I23 (/ISS) Q80XS2 (/ISS) Q9JMG9 (/ISS) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
4 | Q5NBY9 (/IDA) Q78I23 (/IDA) Q80XS2 (/IDA) Q9JMG9 (/IDA) |
|
Negative regulation of endothelial cell migration GO:0010596
Any process that decreases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
|
1 | Q5NBY9 (/IMP) |
|
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
1 | Q9JMG9 (/IDA) |
There are 5 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
17 |
A0A024R1F8 (/IDA)
A0A024R1F8 (/IDA)
A0A024R1F8 (/IDA)
A0A024R1F8 (/IDA)
A0A024R1F8 (/IDA)
A0A024R1M5 (/IDA)
A0A024R1M5 (/IDA)
A0A024R1M5 (/IDA)
A0A024R1M5 (/IDA)
A0A024R1M5 (/IDA)
(7 more) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
6 | Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) Q9HBE1 (/TAS) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | Q5NBY9 (/IDA) Q78I23 (/IDA) Q80XS2 (/IDA) Q9JMG9 (/IDA) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | Q5NBY9 (/ISS) Q78I23 (/ISS) Q80XS2 (/ISS) Q9JMG9 (/ISS) |
|
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
4 | Q5NBY9 (/ISO) Q78I23 (/ISO) Q80XS2 (/ISO) Q9JMG9 (/ISO) |
