The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Classic Zinc Finger
".
FunFam 280: PLAG1 like zinc finger 2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
12 |
Q6DJT9 (/ISA)
Q6DJT9 (/ISA)
Q6DJT9 (/ISA)
Q6DJT9 (/ISA)
Q6DJT9 (/ISA)
Q6DJT9 (/ISA)
Q6DJT9 (/ISA)
Q9UPG8 (/ISA)
Q9UPG8 (/ISA)
Q9UPG8 (/ISA)
(2 more) |
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
12 |
Q6DJT9 (/NAS)
Q6DJT9 (/NAS)
Q6DJT9 (/NAS)
Q6DJT9 (/NAS)
Q6DJT9 (/NAS)
Q6DJT9 (/NAS)
Q6DJT9 (/NAS)
Q9UPG8 (/NAS)
Q9UPG8 (/NAS)
Q9UPG8 (/NAS)
(2 more) |
|
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
12 |
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q9UPG8 (/IDA)
Q9UPG8 (/IDA)
Q9UPG8 (/IDA)
(2 more) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
12 |
Q6DJT9 (/TAS)
Q6DJT9 (/TAS)
Q6DJT9 (/TAS)
Q6DJT9 (/TAS)
Q6DJT9 (/TAS)
Q6DJT9 (/TAS)
Q6DJT9 (/TAS)
Q9UPG8 (/TAS)
Q9UPG8 (/TAS)
Q9UPG8 (/TAS)
(2 more) |
|
RNA polymerase II proximal promoter sequence-specific DNA binding GO:0000978
Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter of a gene transcribed by RNA polymerase II. The proximal promoter is in cis with and relatively close to the core promoter.
|
7 | Q6DJT9 (/IDA) Q6DJT9 (/IDA) Q6DJT9 (/IDA) Q6DJT9 (/IDA) Q6DJT9 (/IDA) Q6DJT9 (/IDA) Q6DJT9 (/IDA) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
5 | Q9UPG8 (/IDA) Q9UPG8 (/IDA) Q9UPG8 (/IDA) Q9UPG8 (/IDA) Q9UPG8 (/IDA) |
|
DNA-binding transcription activator activity, RNA polymerase II-specific GO:0001228
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to activate or increase transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
4 | Q3UZI7 (/ISO) Q6ZQG6 (/ISO) Q925T4 (/ISO) Q9QZJ1 (/ISO) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
4 | Q3UZI7 (/ISO) Q6ZQG6 (/ISO) Q925T4 (/ISO) Q9QZJ1 (/ISO) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Positive regulation of transcription by RNA polymerase II GO:0045944
Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
|
11 |
Q3UZI7 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6ZQG6 (/IDA)
Q925T4 (/IDA)
(1 more) |
|
Lipid metabolic process GO:0006629
The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
|
4 | Q3UZI7 (/IMP) Q6ZQG6 (/IMP) Q925T4 (/IMP) Q9QZJ1 (/IMP) |
|
Post-embryonic development GO:0009791
The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development.
|
4 | Q3UZI7 (/IMP) Q6ZQG6 (/IMP) Q925T4 (/IMP) Q9QZJ1 (/IMP) |
|
Chylomicron assembly GO:0034378
The non-covalent aggregation and arrangement of proteins and lipids in the intestine to form a chylomicron.
|
4 | Q3UZI7 (/IMP) Q6ZQG6 (/IMP) Q925T4 (/IMP) Q9QZJ1 (/IMP) |
|
Positive regulation of intrinsic apoptotic signaling pathway GO:2001244
Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway.
|
4 | Q3UZI7 (/IDA) Q6ZQG6 (/IDA) Q925T4 (/IDA) Q9QZJ1 (/IDA) |
There are 2 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
|
14 |
A0A024R7Z0 (/IDA)
A0A024R7Z0 (/IDA)
A0A024R7Z0 (/IDA)
A0A024R7Z0 (/IDA)
A0A024R7Z0 (/IDA)
A0A024R7Z0 (/IDA)
A0A024R7Z0 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
Q6DJT9 (/IDA)
(4 more) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | Q3UZI7 (/IDA) Q6ZQG6 (/IDA) Q925T4 (/IDA) Q9QZJ1 (/IDA) |
