The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
RNA-binding S4 domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 6: U3 small nucleolar ribonucleoprotein IMP3

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 4 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
10 P32899 (/IPI) P32899 (/IPI) P32899 (/IPI) P32899 (/IPI) P32899 (/IPI) P32899 (/IPI) P32899 (/IPI) P32899 (/IPI) P32899 (/IPI) P32899 (/IPI)
SnoRNA binding GO:0030515
Interacting selectively and non-covalently with small nucleolar RNA.
10 P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
2 Q683D4 (/IDA) Q683D4 (/IDA)
SnoRNA binding GO:0030515
Interacting selectively and non-covalently with small nucleolar RNA.
1 O13835 (/ISO)

There are 4 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
10 P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA)
RRNA methylation GO:0031167
The posttranscriptional addition of methyl groups to specific residues in an rRNA molecule.
10 P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS)
Ribosomal small subunit biogenesis GO:0042274
A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a small ribosomal subunit; includes transport to the sites of protein synthesis.
10 P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA)
RRNA processing GO:0006364
Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
1 O13835 (/ISO)

There are 11 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
10 P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS) P32899 (/TAS)
90S preribosome GO:0030686
A large ribonucleoprotein complex considered to be the earliest preribosomal complex. In S. cerevisiae, it has a size of 90S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
10 P32899 (/HDA) P32899 (/HDA) P32899 (/HDA) P32899 (/HDA) P32899 (/HDA) P32899 (/HDA) P32899 (/HDA) P32899 (/HDA) P32899 (/HDA) P32899 (/HDA)
Small-subunit processome GO:0032040
A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
10 P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA)
Small-subunit processome GO:0032040
A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
10 P32899 (/IMP) P32899 (/IMP) P32899 (/IMP) P32899 (/IMP) P32899 (/IMP) P32899 (/IMP) P32899 (/IMP) P32899 (/IMP) P32899 (/IMP) P32899 (/IMP)
Mpp10 complex GO:0034457
A protein complex that forms a subcomplex of the 90S preribosome. In S. cerevisiae, it is composed of Mpp10p, Imp3p and Imp4p.
10 P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA) P32899 (/IDA)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
2 Q683D4 (/IDA) Q683D4 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 O13835 (/HDA)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
1 O13835 (/HDA)
Small nucleolar ribonucleoprotein complex GO:0005732
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
1 O13835 (/ISO)
Small nuclear ribonucleoprotein complex GO:0030532
A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
1 O13835 (/ISO)
Small-subunit processome GO:0032040
A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.
1 O13835 (/ISO)
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