The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 2: AP-1 complex subunit gamma
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 11 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
B2RYN6 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
(7 more) |
Rab GTPase binding GO:0017137
Interacting selectively and non-covalently with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases.
|
15 |
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
(5 more) |
Kinesin binding GO:0019894
Interacting selectively and non-covalently and stoichiometrically with kinesin, a member of a superfamily of microtubule-based motor proteins that perform force-generating tasks such as organelle transport and chromosome segregation.
|
15 |
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
(5 more) |
GTP-dependent protein binding GO:0030742
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) when at least one of the interacting partners is in the GTP-bound state.
|
15 |
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
O43747 (/IPI)
(5 more) |
Collagen binding GO:0005518
Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
|
1 | B2RYN6 (/IPI) |
Collagen binding GO:0005518
Interacting selectively and non-covalently with collagen, a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals. Collagen is highly enriched in glycine (some regions are 33% glycine) and proline, occurring predominantly as 3-hydroxyproline (about 20%).
|
1 | P22892 (/ISO) |
Protein C-terminus binding GO:0008022
Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
|
1 | B2RYN6 (/IPI) |
Protein C-terminus binding GO:0008022
Interacting selectively and non-covalently with a protein C-terminus, the end of any peptide chain at which the 1-carboxyl function of a constituent amino acid is not attached in peptide linkage to another amino-acid residue.
|
1 | P22892 (/ISO) |
Rab GTPase binding GO:0017137
Interacting selectively and non-covalently with Rab protein, any member of the Rab subfamily of the Ras superfamily of monomeric GTPases.
|
1 | P22892 (/ISO) |
Kinesin binding GO:0019894
Interacting selectively and non-covalently and stoichiometrically with kinesin, a member of a superfamily of microtubule-based motor proteins that perform force-generating tasks such as organelle transport and chromosome segregation.
|
1 | P22892 (/ISO) |
GTP-dependent protein binding GO:0030742
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules) when at least one of the interacting partners is in the GTP-bound state.
|
1 | P22892 (/ISO) |
There are 26 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Antigen processing and presentation of exogenous peptide antigen via MHC class II GO:0019886
The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class II protein complex. The peptide antigen is typically, but not always, processed from a whole protein.
|
15 |
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
(5 more) |
Melanosome organization GO:0032438
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a melanosome. A melanosome is a tissue-specific, membrane-bounded cytoplasmic organelle within which melanin pigments are synthesized and stored.
|
15 |
O43747 (/IC)
O43747 (/IC)
O43747 (/IC)
O43747 (/IC)
O43747 (/IC)
O43747 (/IC)
O43747 (/IC)
O43747 (/IC)
O43747 (/IC)
O43747 (/IC)
(5 more) |
Endosome to melanosome transport GO:0035646
The directed movement of substances from endosomes to the melanosome, a specialised lysosome-related organelle.
|
15 |
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
(5 more) |
Positive regulation of natural killer cell degranulation GO:0043323
Any process that activates or increases the frequency, rate or extent of natural killer cell degranulation.
|
15 |
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
(5 more) |
Positive regulation of natural killer cell mediated cytotoxicity GO:0045954
Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity.
|
15 |
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
(5 more) |
Regulation of defense response to virus by virus GO:0050690
Any viral process that modulates the frequency, rate, or extent of the antiviral response of the host cell or organism.
|
15 |
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
(5 more) |
Golgi to lysosome transport GO:0090160
The directed movement of substances from the Golgi to lysosomes.
|
15 |
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
O43747 (/IMP)
(5 more) |
Vasculature development GO:0001944
The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.
|
2 | A0A0R4IU05 (/IGI) Q7ZUU8 (/IGI) |
Vasculature development GO:0001944
The process whose specific outcome is the progression of the vasculature over time, from its formation to the mature structure. The vasculature is an interconnected tubular multi-tissue structure that contains fluid that is actively transported around the organism.
|
2 | A0A0R4IU05 (/IMP) Q7ZUU8 (/IMP) |
Axis elongation GO:0003401
The developmental growth that results in the elongation of a line that defines polarity or symmetry in an anatomical structure.
|
2 | A0A0R4IU05 (/IGI) Q7ZUU8 (/IGI) |
Axis elongation GO:0003401
The developmental growth that results in the elongation of a line that defines polarity or symmetry in an anatomical structure.
|
2 | A0A0R4IU05 (/IMP) Q7ZUU8 (/IMP) |
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
|
2 | A0A0R4IU05 (/IGI) Q7ZUU8 (/IGI) |
Central nervous system development GO:0007417
The process whose specific outcome is the progression of the central nervous system over time, from its formation to the mature structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.
|
2 | A0A0R4IU05 (/IMP) Q7ZUU8 (/IMP) |
Pectoral fin development GO:0033339
The process whose specific outcome is the progression of the pectoral fin over time, from its formation to the mature structure.
|
2 | A0A0R4IU05 (/IMP) Q7ZUU8 (/IMP) |
Microtubule cytoskeleton organization GO:0000226
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
|
1 | B2RYN6 (/IDA) |
Microtubule cytoskeleton organization GO:0000226
A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.
|
1 | P22892 (/ISO) |
Intracellular protein transport GO:0006886
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
|
1 | P22892 (/TAS) |
Synaptic vesicle budding from endosome GO:0016182
Budding of synaptic vesicles during the formation of constitutive recycling vesicles from early endosomes.
|
1 | B2RYN6 (/IDA) |
Synaptic vesicle budding from endosome GO:0016182
Budding of synaptic vesicles during the formation of constitutive recycling vesicles from early endosomes.
|
1 | B2RYN6 (/IMP) |
Vesicle-mediated transport GO:0016192
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
|
1 | P22892 (/TAS) |
Endosome to melanosome transport GO:0035646
The directed movement of substances from endosomes to the melanosome, a specialised lysosome-related organelle.
|
1 | P22892 (/ISO) |
Positive regulation of natural killer cell degranulation GO:0043323
Any process that activates or increases the frequency, rate or extent of natural killer cell degranulation.
|
1 | P22892 (/ISO) |
Positive regulation of natural killer cell mediated cytotoxicity GO:0045954
Any process that activates or increases the frequency, rate or extent of natural killer cell mediated cytotoxicity.
|
1 | P22892 (/ISO) |
Synaptic vesicle endocytosis GO:0048488
A vesicle-mediated transport process, in which the synaptic vesicle membrane constituents are retrieved from the presynaptic membrane on the axon terminal after neurotransmitter secretion by exocytosis. Synaptic vesicle endocytosis can occur via clathrin-dependent and clathrin-independent mechanisms.
|
1 | B2RYN6 (/IDA) |
Synaptic vesicle endocytosis GO:0048488
A vesicle-mediated transport process, in which the synaptic vesicle membrane constituents are retrieved from the presynaptic membrane on the axon terminal after neurotransmitter secretion by exocytosis. Synaptic vesicle endocytosis can occur via clathrin-dependent and clathrin-independent mechanisms.
|
1 | B2RYN6 (/IMP) |
Golgi to lysosome transport GO:0090160
The directed movement of substances from the Golgi to lysosomes.
|
1 | P22892 (/ISO) |
There are 26 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
34 |
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
(24 more) |
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
|
33 |
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
A0A140VJE7 (/IDA)
(23 more) |
Golgi membrane GO:0000139
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
|
15 |
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
(5 more) |
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
15 |
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
(5 more) |
Lysosomal membrane GO:0005765
The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
|
15 |
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
(5 more) |
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
|
15 |
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
(5 more) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
15 |
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
(5 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
15 |
O43747 (/HDA)
O43747 (/HDA)
O43747 (/HDA)
O43747 (/HDA)
O43747 (/HDA)
O43747 (/HDA)
O43747 (/HDA)
O43747 (/HDA)
O43747 (/HDA)
O43747 (/HDA)
(5 more) |
Clathrin-coated vesicle GO:0030136
A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
|
15 |
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
(5 more) |
Cytoplasmic vesicle membrane GO:0030659
The lipid bilayer surrounding a cytoplasmic vesicle.
|
15 |
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
(5 more) |
Clathrin-coated vesicle membrane GO:0030665
The lipid bilayer surrounding a clathrin-coated vesicle.
|
15 |
O43747 (/ISS)
O43747 (/ISS)
O43747 (/ISS)
O43747 (/ISS)
O43747 (/ISS)
O43747 (/ISS)
O43747 (/ISS)
O43747 (/ISS)
O43747 (/ISS)
O43747 (/ISS)
(5 more) |
Trans-Golgi network membrane GO:0032588
The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
|
15 |
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
O43747 (/TAS)
(5 more) |
Recycling endosome GO:0055037
An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
|
15 |
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
O43747 (/IDA)
(5 more) |
Lysosomal membrane GO:0005765
The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
|
1 | B3KXW5 (/HDA) |
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
|
1 | P22892 (/ISO) |
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
|
1 | P22892 (/IDA) |
Trans-Golgi network GO:0005802
The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
|
1 | P22892 (/TAS) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | P22892 (/ISO) |
Microtubule cytoskeleton GO:0015630
The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins.
|
1 | B2RYN6 (/IDA) |
Microtubule cytoskeleton GO:0015630
The part of the cytoskeleton (the internal framework of a cell) composed of microtubules and associated proteins.
|
1 | P22892 (/ISO) |
Clathrin-coated vesicle GO:0030136
A vesicle with a coat formed of clathrin connected to the membrane via one of the clathrin adaptor complexes.
|
1 | P22892 (/ISO) |
Clathrin-coated vesicle membrane GO:0030665
The lipid bilayer surrounding a clathrin-coated vesicle.
|
1 | Q8R525 (/IDA) |
Intracellular membrane-bounded organelle GO:0043231
Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
|
1 | P22892 (/ISO) |
Perinuclear region of cytoplasm GO:0048471
Cytoplasm situated near, or occurring around, the nucleus.
|
1 | P22892 (/IDA) |
Recycling endosome GO:0055037
An organelle consisting of a network of tubules that functions in targeting molecules, such as receptors transporters and lipids, to the plasma membrane.
|
1 | P22892 (/ISO) |
Presynapse GO:0098793
The part of a synapse that is part of the presynaptic cell.
|
1 | Q8R525 (/IDA) |