The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Nucleic acid-binding proteins
".
FunFam 86: Cold shock domain-containing protein C2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 11 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
Q63430 (/IPI)
Q9CR86 (/IPI)
Q9CR86 (/IPI)
Q9Y2V2 (/IPI)
Q9Y2V2 (/IPI)
Q9Y2V2 (/IPI)
Q9Y2V2 (/IPI)
Q9Y534 (/IPI)
Q9Y534 (/IPI)
Q9Y534 (/IPI)
(7 more) |
|
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
10 | Q9Y534 (/NAS) Q9Y534 (/NAS) Q9Y534 (/NAS) Q9Y534 (/NAS) Q9Y534 (/NAS) Q9Y534 (/NAS) Q9Y534 (/NAS) Q9Y534 (/NAS) Q9Y534 (/NAS) Q9Y534 (/NAS) |
|
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
4 | Q9Y2V2 (/ISM) Q9Y2V2 (/ISM) Q9Y2V2 (/ISM) Q9Y2V2 (/ISM) |
|
MRNA 3'-UTR binding GO:0003730
Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
|
4 | Q9Y2V2 (/IDA) Q9Y2V2 (/IDA) Q9Y2V2 (/IDA) Q9Y2V2 (/IDA) |
|
Phosphatase binding GO:0019902
Interacting selectively and non-covalently with any phosphatase.
|
4 | Q9Y2V2 (/NAS) Q9Y2V2 (/NAS) Q9Y2V2 (/NAS) Q9Y2V2 (/NAS) |
|
MRNA 3'-UTR binding GO:0003730
Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
|
3 | Q9CR86 (/ISS) Q9CR86 (/ISS) Q9WU49 (/ISS) |
|
MRNA 3'-UTR binding GO:0003730
Interacting selectively and non-covalently with the 3' untranslated region of an mRNA molecule.
|
2 | Q9CR86 (/ISO) Q9CR86 (/ISO) |
|
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | Q63430 (/IDA) |
|
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1 | Q91YQ3 (/ISO) |
|
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
|
1 | Q63430 (/IPI) |
|
Transcription factor binding GO:0008134
Interacting selectively and non-covalently with a transcription factor, a protein required to initiate or regulate transcription.
|
1 | Q91YQ3 (/ISO) |
There are 5 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Regulation of mRNA stability GO:0043488
Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs.
|
5 | Q9WU49 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) |
|
Intracellular signal transduction GO:0035556
The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
|
4 | Q9Y2V2 (/TAS) Q9Y2V2 (/TAS) Q9Y2V2 (/TAS) Q9Y2V2 (/TAS) |
|
Regulation of mRNA stability GO:0043488
Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs.
|
2 | Q9CR86 (/IMP) Q9CR86 (/IMP) |
|
Dendrite morphogenesis GO:0048813
The process in which the anatomical structures of a dendrite are generated and organized.
|
2 | Q9VVA0 (/IMP) Q9VVA0 (/IMP) |
|
Calcium-mediated signaling GO:0019722
Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions.
|
1 | Q9WU49 (/NAS) |
There are 8 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
5 | Q9WU49 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) |
|
P granule GO:0043186
A small cytoplasmic, non-membranous RNA/protein complex aggregates in the primordial germ cells of many higher eukaryotes.
|
5 | Q9WU49 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) Q9Y2V2 (/ISS) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
2 | Q9CR86 (/ISO) Q9CR86 (/ISO) |
|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
2 | Q9CR86 (/IDA) Q9CR86 (/IDA) |
|
P granule GO:0043186
A small cytoplasmic, non-membranous RNA/protein complex aggregates in the primordial germ cells of many higher eukaryotes.
|
2 | Q9CR86 (/IDA) Q9CR86 (/IDA) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q63430 (/IDA) |
|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q91YQ3 (/ISO) |
|
Cytoplasm GO:0005737
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
|
1 | Q9WU49 (/IDA) |
