The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Nucleic acid-binding proteins
".
FunFam 6: Cold shock protein CspC
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 8 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Single-stranded DNA binding GO:0003697
Interacting selectively and non-covalently with single-stranded DNA.
|
1066 |
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
(1056 more) |
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
|
1066 |
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
(1056 more) |
Transcription antitermination factor activity, RNA binding GO:0001072
Binds to RNA, typically within the nascent RNA transcript, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind the nascent RNA include the lambda N protein and the HIV-1 tat protein.
|
837 |
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
(827 more) |
Chaperone binding GO:0051087
Interacting selectively and non-covalently with a chaperone protein, a class of proteins that bind to nascent or unfolded polypeptides and ensure correct folding or transport.
|
498 |
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
P0A9Y6 (/IDA)
(488 more) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
339 |
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
(329 more) |
Single-stranded RNA binding GO:0003727
Interacting selectively and non-covalently with single-stranded RNA.
|
339 |
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
(329 more) |
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
179 |
P0A968 (/IPI)
P0A968 (/IPI)
P0A968 (/IPI)
P0A968 (/IPI)
P0A968 (/IPI)
P0A968 (/IPI)
P0A968 (/IPI)
P0A968 (/IPI)
P0A968 (/IPI)
P0A968 (/IPI)
(169 more) |
DNA binding GO:0003677
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
|
1 | Q608G8 (/ISS) |
There are 10 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Negative regulation of DNA-templated transcription, termination GO:0060567
Any process that decreases the rate, frequency or extent of DNA-dependent transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
|
837 |
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
(827 more) |
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
339 |
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
P0A9X9 (/IDA)
(329 more) |
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
339 |
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
(329 more) |
Transcription, DNA-templated GO:0006351
The cellular synthesis of RNA on a template of DNA.
|
339 |
P0A9X9 (/TAS)
P0A9X9 (/TAS)
P0A9X9 (/TAS)
P0A9X9 (/TAS)
P0A9X9 (/TAS)
P0A9X9 (/TAS)
P0A9X9 (/TAS)
P0A9X9 (/TAS)
P0A9X9 (/TAS)
P0A9X9 (/TAS)
(329 more) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
339 |
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
P0A9X9 (/IEP)
(329 more) |
Negative regulation of DNA replication GO:0008156
Any process that stops, prevents, or reduces the frequency, rate or extent of DNA replication.
|
179 |
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
(169 more) |
Response to starvation GO:0042594
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment.
|
179 |
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
(169 more) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
117 |
P0A986 (/IDA)
P0A986 (/IDA)
P0A986 (/IDA)
P0A986 (/IDA)
P0A986 (/IDA)
P0A986 (/IDA)
P0A986 (/IDA)
P0A986 (/IDA)
P0A986 (/IDA)
P0A986 (/IDA)
(107 more) |
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
23 |
Q608G8 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
(13 more) |
Response to cold GO:0009409
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
|
23 |
Q608G8 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
Q9KN00 (/ISS)
(13 more) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1133 |
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
P0A968 (/IDA)
(1123 more) |
Membrane GO:0016020
A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
|
498 |
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
P0A9Y6 (/HDA)
(488 more) |
Cell wall GO:0005618
The rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, most prokaryotic cells and some protozoan parasites, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan; in protozoan parasites such as Giardia species, it's made of carbohydrates and proteins.
|
31 |
P9WP75 (/HDA)
P9WP75 (/HDA)
P9WP75 (/HDA)
P9WP75 (/HDA)
P9WP75 (/HDA)
P9WP75 (/HDA)
P9WP75 (/HDA)
P9WP75 (/HDA)
P9WP75 (/HDA)
P9WP75 (/HDA)
(21 more) |